CRISPRone

CRISPRone report for GCA_014333625.1_ASM1433362v1

♦ Seq 1: JACSDL010000002.1 Clostridioides difficile strain CD34-Sr NODE_2_length_411725_cov_57.087629, whole genome shotgun sequence

⇒Summary: seq-len = 411725 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252425-264004 bp Zoom in on locus 1 x31 CRISPR array Location: 252425-254409 bp Num of repeats: 31 Spacers: s1-s30 CRISPR array Location: 252425-254409 bp Num of repeats: 31 Spacers: s1-s30 Gene: cd09725:cas2 Type: universal Location: 254593-254859 bp Gene: cd09722:cas1 Type: universal Location: 254862-255842 bp Gene: pfam01930:cas4 Type: Type-I Location: 255845-256363 bp Gene: cd09641:cas3HD Type: Type-I Location: 256411-258732 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258743-259444 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259446-260360 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260362-262212 bp Gene: pfam01881:cas6 Type: other Location: 262218-262955 bp Gene: pfam13280:WYL Type: other Location: 263033-264004 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252425-254409 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACSDL010000003.1 Clostridioides difficile strain CD34-Sr NODE_3_length_410108_cov_43.002771, whole genome shotgun sequence

⇒Summary: seq-len = 410108 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 171318-172595 bp 2 Locus 2: 309572-309863 bp 3 Locus 3: 391224-392239 bp Zoom in on locus 1 x20 Zoom in on locus 2 x5 Zoom in on locus 3 x16 CRISPR array Location: 171318-172595 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 171318-172595 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 309572-309863 bp Num of repeats: 5 Spacers: s20-s23 CRISPR array Location: 309572-309863 bp Num of repeats: 5 Spacers: s20-s23 CRISPR array Location: 391224-392239 bp Num of repeats: 16 Spacers: s24-s38 CRISPR array Location: 391224-392239 bp Num of repeats: 16 Spacers: s24-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 171318-172595 bp]: array | spacers
           [Locus range 309572-309863 bp]: array | spacers
           [Locus range 391224-392239 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JACSDL010000001.1 Clostridioides difficile strain CD34-Sr NODE_1_length_993167_cov_46.910023, whole genome shotgun sequence

⇒Summary: seq-len = 993167 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 239634-240129 bp 2 Locus 2: 315290-323155 bp 3 Locus 3: 488686-489108 bp 4 Locus 4: 848331-848624 bp Zoom in on locus 1 x8 Zoom in on locus 2 Zoom in on locus 3 x7 Zoom in on locus 4 x5 CRISPR array Location: 239634-240129 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 239634-240129 bp Num of repeats: 8 Spacers: s1-s7 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 315290-316399 bp Gene: pfam01881:cas6 Type: other Location: 316657-317394 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 317399-318874 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 318894-319907 bp Gene: cd09693:cas5 Type: Type-I Location: 319923-320720 bp Gene: cd09641:cas3HD Type: Type-I Location: 320747-323155 bp CRISPR array Location: 488686-489108 bp Num of repeats: 7 Spacers: s8-s13 CRISPR array Location: 488686-489108 bp Num of repeats: 7 Spacers: s8-s13 CRISPR array Location: 848331-848624 bp Num of repeats: 5 Spacers: s14-s17 CRISPR array Location: 848331-848624 bp Num of repeats: 5 Spacers: s14-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 239634-240129 bp]: array | spacers
           [Locus range 488686-489108 bp]: array | spacers
           [Locus range 848331-848624 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JACSDL010000008.1 Clostridioides difficile strain CD34-Sr NODE_8_length_212681_cov_46.963068, whole genome shotgun sequence

⇒Summary: seq-len = 212681 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90949-92227 bp Zoom in on locus 1 x20 CRISPR array Location: 90949-92227 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 90949-92227 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90949-92227 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JACSDL010000005.1 Clostridioides difficile strain CD34-Sr NODE_5_length_272072_cov_50.472029, whole genome shotgun sequence

⇒Summary: seq-len = 272072 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185781-186073 bp Zoom in on locus 1 x5 CRISPR array Location: 185781-186073 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 185781-186073 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185781-186073 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)