CRISPRone

CRISPRone report for GCA_014489175.1_ASM1448917v1

♦ Seq 1: JACTAE010000008.1 Pseudomonas aeruginosa strain P469 SQ429_S95_L002_R1_001_contig_8, whole genome shotgun sequence

⇒Summary: seq-len = 68156 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4557-16203 bp Zoom in on locus 1 x24 x27 CRISPR array Location: 4557-5965 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 4557-5965 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09718:cas1 Type: universal Location: 6225-7199 bp Gene: COG1203:cas3 Type: Type-I Location: 7196-10426 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 10484-11788 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 11775-12758 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 12769-13797 bp Gene: cd09739:cas6f Type: other Location: 13801-14364 bp CRISPR array Location: 14614-16203 bp Num of repeats: 27 Spacers: s24-s49 CRISPR array Location: 14614-16203 bp Num of repeats: 27 Spacers: s24-s49 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 4557-5965 bp]: array | spacers
           [Locus range 14614-16203 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACTAE010000041.1 Pseudomonas aeruginosa strain P469 SQ429_S95_L002_R1_001_contig_41, whole genome shotgun sequence

⇒Summary: seq-len = 161099 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 142224-149346 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 142224-143219 bp Gene: pfam13280:WYL Type: other Location: 147193-148239 bp Gene: pfam13280:WYL Type: other Location: 148474-149346 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JACTAE010000020.1 Pseudomonas aeruginosa strain P469 SQ429_S95_L002_R1_001_contig_20, whole genome shotgun sequence

⇒Summary: seq-len = 539311 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 253900-264654 bp Zoom in on locus 1 x18 x8 CRISPR array Location: 253900-254966 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 253900-254966 bp Num of repeats: 18 Spacers: s1-s17 Gene: pfam09707:cas2 Type: universal Location: 255031-255330 bp Gene: cd09719:cas1 Type: universal Location: 255327-256217 bp Gene: pfam08798:cas6e Type: other Location: 256244-256783 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 256830-257492 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 257494-258636 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 258646-259176 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 259173-260741 bp Gene: cd09641:cas3HD Type: Type-I Location: 260744-263425 bp CRISPR array Location: 264199-264654 bp Num of repeats: 8 Spacers: s18-s24 CRISPR array Location: 264199-264654 bp Num of repeats: 8 Spacers: s18-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 253900-254966 bp]: array | spacers
           [Locus range 264199-264654 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)