CRISPRone

CRISPRone report for GCA_014672795.1_ASM1467279v1

♦ Seq 1: CP059852.1 Pseudomonas aeruginosa strain ZM03 chromosome, complete genome

⇒Summary: seq-len = 6939908 bp; # of CRISPR array = 2; # of cas gene = 17  (type I, III, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21785-27332 bp 2 Locus 2: 1284364-1295163 bp 3 Locus 3: 3072453-3083037 bp 4 Locus 4: 6197936-6218570 bp Zoom in on locus 1 Zoom in on locus 2 x28 x10 Zoom in on locus 3 Zoom in on locus 4 Gene: cd06127:DEDDh Type: Type-I Location: 21785-22342 bp Gene: unk Type: unknown Location: 22484-23380 bp Gene: unk Type: unknown Location: 23377-23868 bp Gene: unk Type: unknown Location: 23865-24809 bp Gene: pfam13280:WYL Type: other Location: 25084-25983 bp Gene: cls000022:cmr5gr11 Type: Subtype-III-B Location: 26565-27332 bp CRISPR array Location: 1284364-1286012 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 1284364-1286012 bp Num of repeats: 28 Spacers: s1-s27 Gene: cd09718:cas1 Type: universal Location: 1286273-1287247 bp Gene: COG1203:cas3 Type: Type-I Location: 1287244-1290474 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 1290532-1291836 bp Gene: unk Type: unknown Location: 1292011-1292184 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 1292230-1292805 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1292816-1293844 bp Gene: cd09739:cas6f Type: other Location: 1293848-1294411 bp CRISPR array Location: 1294596-1295163 bp Num of repeats: 10 Spacers: s28-s36 CRISPR array Location: 1294596-1295163 bp Num of repeats: 10 Spacers: s28-s36 Gene: cls000170:cas4 Type: Type-I Location: 3072453-3073775 bp Gene: unk Type: unknown Location: 3073736-3073996 bp Gene: unk Type: unknown Location: 3075080-3075259 bp Gene: pfam00078:RT Type: other Location: 3075991-3077259 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 3082168-3083037 bp Gene: pfam13280:WYL Type: other Location: 6197936-6198679 bp Gene: unk Type: unknown Location: 6199012-6199884 bp Gene: unk Type: unknown Location: 6199920-6200486 bp Gene: cd09637:cas4 Type: other Location: 6200494-6203145 bp Gene: pfam13280:WYL Type: other Location: 6209947-6210966 bp Gene: unk Type: unknown Location: 6212769-6213200 bp Gene: unk Type: unknown Location: 6213257-6213790 bp Gene: pfam13280:WYL Type: other Location: 6213805-6214680 bp Gene: unk Type: unknown Location: 6214811-6215098 bp Gene: unk Type: unknown Location: 6215233-6215811 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 6216204-6218570 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1284364-1286012 bp]: array | spacers
           [Locus range 1294596-1295163 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)