CRISPRone

CRISPRone report for GCA_014672935.1_ASM1467293v1

♦ Seq 1: JACWII010000020.1 Pseudomonas aeruginosa strain PA235 NODE_20_length_64266_cov_28.310544, whole genome shotgun sequence

⇒Summary: seq-len = 64222 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 517-1624 bp Zoom in on locus 1 x19 CRISPR array Location: 517-1624 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 517-1624 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 517-1624 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACWII010000019.1 Pseudomonas aeruginosa strain PA235 NODE_19_length_69179_cov_25.017900, whole genome shotgun sequence

⇒Summary: seq-len = 69179 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38286-48067 bp Zoom in on locus 1 x10 x11 CRISPR array Location: 38286-38854 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 38286-38854 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09739:cas6f Type: other Location: 39036-39599 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39603-40631 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40642-41625 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41612-42916 bp Gene: COG1203:cas3 Type: Type-I Location: 42974-46204 bp Gene: cd09718:cas1 Type: universal Location: 46201-47175 bp CRISPR array Location: 47440-48067 bp Num of repeats: 11 Spacers: s10-s19 CRISPR array Location: 47440-48067 bp Num of repeats: 11 Spacers: s10-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38286-38854 bp]: array | spacers
           [Locus range 47440-48067 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)