CRISPRone

CRISPRone report for GCA_014673145.1_ASM1467314v1

♦ Seq 1: JACWIG010000016.1 Pseudomonas aeruginosa strain PA227 NODE_16_length_165182_cov_30.902275, whole genome shotgun sequence

⇒Summary: seq-len = 165182 bp; # of CRISPR array = 0; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80394-93122 bp 2 Locus 2: 111710-124800 bp Zoom in on locus 1 Zoom in on locus 2 Gene: COG0640:csa3 Type: Subtype-I-A Location: 80394-81311 bp Gene: unk Type: unknown Location: 81462-82511 bp Gene: mkCas0071:csa5gr11 Type: Subtype-I-A Location: 82554-84524 bp Gene: unk Type: unknown Location: 84649-85113 bp Gene: unk Type: unknown Location: 91587-92498 bp Gene: cd06127:DEDDh Type: Type-I Location: 92577-93122 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 111710-112012 bp Gene: cd09641:cas3HD Type: Type-I Location: 121694-123553 bp Gene: unk Type: unknown Location: 123369-123959 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 124495-124800 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JACWIG010000031.1 Pseudomonas aeruginosa strain PA227 NODE_31_length_49323_cov_18.632531, whole genome shotgun sequence

⇒Summary: seq-len = 49323 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 343-11082 bp Zoom in on locus 1 x17 x20 CRISPR array Location: 343-1333 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 343-1333 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09718:cas1 Type: universal Location: 1594-2568 bp Gene: COG1203:cas3 Type: Type-I Location: 2565-5795 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5853-7157 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7144-8127 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8138-9166 bp Gene: cd09739:cas6f Type: other Location: 9170-9733 bp CRISPR array Location: 9918-11082 bp Num of repeats: 20 Spacers: s17-s35 CRISPR array Location: 9918-11082 bp Num of repeats: 20 Spacers: s17-s35 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 343-1333 bp]: array | spacers
           [Locus range 9918-11082 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JACWIG010000003.1 Pseudomonas aeruginosa strain PA227 NODE_3_length_530016_cov_20.588944, whole genome shotgun sequence

⇒Summary: seq-len = 530016 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 105450-105838 bp Zoom in on locus 1 x7 CRISPR array Location: 105450-105838 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 105450-105838 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 105450-105838 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)