CRISPRone

CRISPRone report for GCA_014892595.1_ASM1489259v1

♦ Seq 1: JADBHY010000001.1 Pseudomonas aeruginosa strain RTE4 NODE_1_length_704780_cov_36.631048, whole genome shotgun sequence

⇒Summary: seq-len = 704780 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 208545-209173 bp Zoom in on locus 1 x11 CRISPR array Location: 208545-209173 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 208545-209173 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 208545-209173 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JADBHY010000011.1 Pseudomonas aeruginosa strain RTE4 NODE_11_length_246558_cov_34.253053, whole genome shotgun sequence

⇒Summary: seq-len = 246558 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 52968-64118 bp Zoom in on locus 1 x17 x21 CRISPR array Location: 52968-53956 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 52968-53956 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09739:cas6f Type: other Location: 54140-54703 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 54707-55735 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 55746-56729 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 56716-58017 bp Gene: COG1203:cas3 Type: Type-I Location: 58428-61658 bp Gene: cd09718:cas1 Type: universal Location: 61655-62629 bp CRISPR array Location: 62890-64118 bp Num of repeats: 21 Spacers: s17-s36 CRISPR array Location: 62890-64118 bp Num of repeats: 21 Spacers: s17-s36 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 52968-53956 bp]: array | spacers
           [Locus range 62890-64118 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)