CRISPRone

CRISPRone report for GCA_014893755.1_ASM1489375v1

♦ Seq 1: JACWLM010000001.1 Bacteroides fragilis strain GB-124 Bacteroides_fragilis_GB124-contig1, whole genome shotgun sequence

⇒Summary: seq-len = 4986460 bp; # of CRISPR array = 2; # of cas gene = 15  (type I, II, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 105736-113994 bp 2 Locus 2: 3330509-3345578 bp 3 Locus 3: 4499806-4503419 bp Zoom in on locus 1 x19 Zoom in on locus 2 x21 Zoom in on locus 3 CRISPR array Location: 105736-107159 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 105736-107159 bp Num of repeats: 19 Spacers: s1-s18 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 107268-107600 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 107604-108536 bp Gene: unk Type: unknown Location: 108656-108964 bp Gene: unk Type: unknown Location: 109031-109555 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 109571-113881 bp antiRepeat Location: 113949-113994 bp Strand: - Match length: 26 bp Mismatch: 21 bp Gene: cls000004:cas6 Type: other Location: 3330509-3331177 bp Gene: unk Type: unknown Location: 3331195-3331821 bp Gene: unk Type: unknown Location: 3331797-3332576 bp Gene: cash17:cash17 Type: Type- Location: 3332621-3334048 bp Gene: unk Type: unknown Location: 3334045-3334524 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 3334538-3335947 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 3335952-3337754 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 3337747-3338886 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 3338906-3339745 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 3339758-3340168 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 3340171-3341115 bp Gene: cd09634:cas1 Type: universal Location: 3341135-3343405 bp Gene: cd09725:cas2 Type: universal Location: 3343399-3343689 bp CRISPR array Location: 3344137-3345578 bp Num of repeats: 21 Spacers: s19-s38 CRISPR array Location: 3344137-3345578 bp Num of repeats: 21 Spacers: s19-s38 Gene: cd09692:cas5 Type: Subtype-I-B Location: 4499806-4500474 bp Gene: unk Type: unknown Location: 4500477-4501250 bp Gene: unk Type: unknown Location: 4501258-4502523 bp Gene: pfam13280:WYL Type: other Location: 4502520-4503419 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 105736-107159 bp]: array | spacers
           [Locus range 3344137-3345578 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)