CRISPRone

CRISPRone report for GCA_015238635.1_ASM1523863v1

♦ Seq 1: CP049958.1 Clostridioides difficile strain CFSAN096664 chromosome, complete genome

⇒Summary: seq-len = 4313277 bp; # of CRISPR array = 9; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 751828-764292 bp 2 Locus 2: 1261698-1262394 bp 3 Locus 3: 1335676-1343532 bp 4 Locus 4: 1508549-1509037 bp 5 Locus 5: 1867889-1868047 bp 6 Locus 6: 2197241-2198660 bp 7 Locus 7: 2329497-2329766 bp 8 Locus 8: 2422392-2422818 bp 9 Locus 9: 2533104-2533330 bp 10 Locus 10: 2787675-2789024 bp Zoom in on locus 1 x45 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x8 Zoom in on locus 5 x3 Zoom in on locus 6 x22 Zoom in on locus 7 x5 Zoom in on locus 8 x7 Zoom in on locus 9 x4 Zoom in on locus 10 x21 Gene: pfam13280:WYL Type: other Location: 751828-752715 bp Gene: pfam01881:cas6 Type: other Location: 752793-753530 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 753536-755413 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 755415-756329 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 756331-757032 bp Gene: COG1203:cas3 Type: Type-I Location: 757043-759364 bp Gene: pfam01930:cas4 Type: Type-I Location: 759379-759930 bp Gene: cd09722:cas1 Type: universal Location: 759933-760913 bp Gene: cd09725:cas2 Type: universal Location: 760916-761182 bp CRISPR array Location: 761366-764292 bp Num of repeats: 45 Spacers: s1-s44 CRISPR array Location: 761366-764292 bp Num of repeats: 45 Spacers: s1-s44 CRISPR array Location: 1261698-1262394 bp Num of repeats: 11 Spacers: s45-s54 CRISPR array Location: 1261698-1262394 bp Num of repeats: 11 Spacers: s45-s54 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1335676-1336785 bp Gene: pfam01881:cas6 Type: other Location: 1337043-1337780 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1337785-1339251 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1339271-1340284 bp Gene: cd09693:cas5 Type: Type-I Location: 1340300-1341097 bp Gene: cd09641:cas3HD Type: Type-I Location: 1341124-1343532 bp CRISPR array Location: 1508549-1509037 bp Num of repeats: 8 Spacers: s55-s61 CRISPR array Location: 1508549-1509037 bp Num of repeats: 8 Spacers: s55-s61 CRISPR array Location: 1867889-1868047 bp Num of repeats: 3 Spacers: s62-s63 CRISPR array Location: 1867889-1868047 bp Num of repeats: 3 Spacers: s62-s63 CRISPR array Location: 2197241-2198660 bp Num of repeats: 22 Spacers: s64-s84 CRISPR array Location: 2197241-2198660 bp Num of repeats: 22 Spacers: s64-s84 CRISPR array Location: 2329497-2329766 bp Num of repeats: 5 Spacers: s85-s88 CRISPR array Location: 2329497-2329766 bp Num of repeats: 5 Spacers: s85-s88 CRISPR array Location: 2422392-2422818 bp Num of repeats: 7 Spacers: s89-s94 CRISPR array Location: 2422392-2422818 bp Num of repeats: 7 Spacers: s89-s94 CRISPR array Location: 2533104-2533330 bp Num of repeats: 4 Spacers: s95-s97 CRISPR array Location: 2533104-2533330 bp Num of repeats: 4 Spacers: s95-s97 CRISPR array Location: 2787675-2789024 bp Num of repeats: 21 Spacers: s98-s117 CRISPR array Location: 2787675-2789024 bp Num of repeats: 21 Spacers: s98-s117 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 761366-764292 bp]: array | spacers
           [Locus range 1261698-1262394 bp]: array | spacers
           [Locus range 1508549-1509037 bp]: array | spacers
           [Locus range 1867889-1868047 bp]: array | spacers
           [Locus range 2197241-2198660 bp]: array | spacers
           [Locus range 2329497-2329766 bp]: array | spacers
           [Locus range 2422392-2422818 bp]: array | spacers
           [Locus range 2533104-2533330 bp]: array | spacers
           [Locus range 2787675-2789024 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)