CRISPRone

CRISPRone report for GCA_015265725.1_ASM1526572v1

♦ Seq 1: JADIWK010000043.1 Pseudomonas aeruginosa strain P3 contig00043, whole genome shotgun sequence

⇒Summary: seq-len = 48976 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38295-48714 bp Zoom in on locus 1 x18 x8 CRISPR array Location: 38295-39343 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 38295-39343 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09739:cas6f Type: other Location: 39526-40089 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40093-41121 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41132-42115 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42102-43403 bp Gene: COG1203:cas3 Type: Type-I Location: 43814-47044 bp Gene: cd09718:cas1 Type: universal Location: 47041-48015 bp CRISPR array Location: 48267-48714 bp Num of repeats: 8 Spacers: s18-s24 CRISPR array Location: 48267-48714 bp Num of repeats: 8 Spacers: s18-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38295-39343 bp]: array | spacers
           [Locus range 48267-48714 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JADIWK010000002.1 Pseudomonas aeruginosa strain P3 contig00002, whole genome shotgun sequence

⇒Summary: seq-len = 358450 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 251478-252226 bp Zoom in on locus 1 x13 CRISPR array Location: 251478-252226 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 251478-252226 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 251478-252226 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)