CRISPRone

CRISPRone report for GCA_015317085.1_ASM1531708v1

♦ Seq 1: JABDTR010000022.1 Pseudomonas aeruginosa strain 9-86 CMOJOEHE_22, whole genome shotgun sequence

⇒Summary: seq-len = 72115 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25058-25638 bp Zoom in on locus 1 x10 CRISPR array Location: 25058-25638 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 25058-25638 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 25058-25638 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABDTR010000018.1 Pseudomonas aeruginosa strain 9-86 CMOJOEHE_18, whole genome shotgun sequence

⇒Summary: seq-len = 77785 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32608-43087 bp Zoom in on locus 1 x41 CRISPR array Location: 32608-35295 bp Num of repeats: 41 Spacers: s1-s40 CRISPR array Location: 32608-35295 bp Num of repeats: 41 Spacers: s1-s40 Gene: cd09725:cas2 Type: universal Location: 35477-35767 bp Gene: cd09721:cas1 Type: universal Location: 35777-36817 bp Gene: pfam01930:cas4 Type: Type-I Location: 36821-37453 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 37472-38341 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 38338-40131 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 40128-40802 bp Gene: cd09641:cas3HD Type: Type-I Location: 40853-43087 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 32608-35295 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JABDTR010000061.1 Pseudomonas aeruginosa strain 9-86 CMOJOEHE_61, whole genome shotgun sequence

⇒Summary: seq-len = 35038 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19093-29664 bp Zoom in on locus 1 x14 x2 x6 CRISPR array Location: 19093-19914 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 19093-19914 bp Num of repeats: 14 Spacers: s1-s13 Gene: pfam09707:cas2 Type: universal Location: 19979-20278 bp Gene: cd09719:cas1 Type: universal Location: 20275-21165 bp Gene: pfam08798:cas6e Type: other Location: 21192-21731 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 21778-22440 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 22442-23584 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 23594-24124 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 24121-25689 bp Gene: cd09641:cas3HD Type: Type-I Location: 25692-28373 bp CRISPR array Location: 29147-29236 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 29147-29236 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 29331-29664 bp Num of repeats: 6 Spacers: s15-s19 CRISPR array Location: 29331-29664 bp Num of repeats: 6 Spacers: s15-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19093-19914 bp]: array | spacers
           [Locus range 29147-29236 bp]: array | spacers
           [Locus range 29331-29664 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)