CRISPRone

CRISPRone report for GCA_015317175.1_ASM1531717v1

♦ Seq 1: JABDTU010000725.1 Pseudomonas aeruginosa strain 9-25 BGGFLAHE_725, whole genome shotgun sequence

⇒Summary: seq-len = 1426 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-307 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 2-307 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABDTU010000003.1 Pseudomonas aeruginosa strain 9-25 BGGFLAHE_3, whole genome shotgun sequence

⇒Summary: seq-len = 67028 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31518-40973 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 31518-33884 bp Gene: unk Type: unknown Location: 34277-34924 bp Gene: unk Type: unknown Location: 34948-36528 bp Gene: pfam13280:WYL Type: other Location: 36658-37533 bp Gene: pfam13280:WYL Type: other Location: 39897-40973 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JABDTU010000037.1 Pseudomonas aeruginosa strain 9-25 BGGFLAHE_37, whole genome shotgun sequence

⇒Summary: seq-len = 25985 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2199-13358 bp Zoom in on locus 1 x12 x32 CRISPR array Location: 2199-2887 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 2199-2887 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09739:cas6f Type: other Location: 3070-3633 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 3637-4665 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 4676-5659 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5646-6950 bp Gene: COG1203:cas3 Type: Type-I Location: 7008-10238 bp Gene: cd09718:cas1 Type: universal Location: 10235-11209 bp CRISPR array Location: 11471-13358 bp Num of repeats: 32 Spacers: s12-s42 CRISPR array Location: 11471-13358 bp Num of repeats: 32 Spacers: s12-s42 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2199-2887 bp]: array | spacers
           [Locus range 11471-13358 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)