CRISPRone

CRISPRone report for GCA_015317435.1_ASM1531743v1

♦ Seq 1: JABDUG010000051.1 Pseudomonas aeruginosa strain 5-23 IGKBJFBM_51, whole genome shotgun sequence

⇒Summary: seq-len = 37142 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1192-13011 bp Zoom in on locus 1 x36 x19 CRISPR array Location: 1192-3320 bp Num of repeats: 36 Spacers: s1-s35 CRISPR array Location: 1192-3320 bp Num of repeats: 36 Spacers: s1-s35 Gene: cd09718:cas1 Type: universal Location: 3581-4555 bp Gene: COG1203:cas3 Type: Type-I Location: 4552-7782 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 7840-9144 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 9131-10114 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 10125-11153 bp Gene: cd09739:cas6f Type: other Location: 11157-11720 bp CRISPR array Location: 11904-13011 bp Num of repeats: 19 Spacers: s36-s53 CRISPR array Location: 11904-13011 bp Num of repeats: 19 Spacers: s36-s53 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1192-3320 bp]: array | spacers
           [Locus range 11904-13011 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABDUG010000373.1 Pseudomonas aeruginosa strain 5-23 IGKBJFBM_373, whole genome shotgun sequence

⇒Summary: seq-len = 259 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-271 bp Zoom in on locus 1 x5 CRISPR array Location: 3-271 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 3-271 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3-271 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)