CRISPRone

CRISPRone report for GCA_015317695.1_ASM1531769v1

♦ Seq 1: JABDUU010000476.1 Pseudomonas aeruginosa strain 3-69 PEAJHPNN_476, whole genome shotgun sequence

⇒Summary: seq-len = 3502 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1089-1607 bp Zoom in on locus 1 x6 x2 CRISPR array Location: 1089-1423 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1089-1423 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1517-1607 bp Num of repeats: 2 Spacers: s6-s6 CRISPR array Location: 1517-1607 bp Num of repeats: 2 Spacers: s6-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1089-1423 bp]: array | spacers
           [Locus range 1517-1607 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABDUU010000004.1 Pseudomonas aeruginosa strain 3-69 PEAJHPNN_4, whole genome shotgun sequence

⇒Summary: seq-len = 46631 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16-1038 bp Zoom in on locus 1 x16 CRISPR array Location: 16-1038 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 16-1038 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16-1038 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JABDUU010000005.1 Pseudomonas aeruginosa strain 3-69 PEAJHPNN_5, whole genome shotgun sequence

⇒Summary: seq-len = 44469 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34753-44441 bp Zoom in on locus 1 x29 Gene: cd09641:cas3HD Type: Type-I Location: 34753-36987 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 37038-37712 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 37709-39502 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 39499-40368 bp Gene: pfam01930:cas4 Type: Type-I Location: 40387-41019 bp Gene: cd09721:cas1 Type: universal Location: 41023-42063 bp Gene: cd09725:cas2 Type: universal Location: 42073-42363 bp CRISPR array Location: 42545-44441 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 42545-44441 bp Num of repeats: 29 Spacers: s1-s28 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 42545-44441 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JABDUU010000096.1 Pseudomonas aeruginosa strain 3-69 PEAJHPNN_96, whole genome shotgun sequence

⇒Summary: seq-len = 9921 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-8168 bp Zoom in on locus 1 x14 Gene: cd09639:cas3 Type: Type-I Location: 3-1568 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 1571-3139 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 3136-3666 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 3676-4818 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 4820-5482 bp Gene: pfam08798:cas6e Type: other Location: 5457-6068 bp Gene: cd09719:cas1 Type: universal Location: 6095-6985 bp Gene: pfam09707:cas2 Type: universal Location: 6982-7281 bp CRISPR array Location: 7346-8168 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 7346-8168 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7346-8168 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)