CRISPRone

CRISPRone report for GCA_015317905.1_ASM1531790v1

♦ Seq 1: JABDVE010000038.1 Pseudomonas aeruginosa strain 10-99 CLFPDJDD_38, whole genome shotgun sequence

⇒Summary: seq-len = 14730 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1280-11598 bp Zoom in on locus 1 x15 x15 CRISPR array Location: 1280-2148 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1280-2148 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09718:cas1 Type: universal Location: 2408-3382 bp Gene: COG1203:cas3 Type: Type-I Location: 3379-6609 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6667-7971 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7958-8941 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8952-9980 bp Gene: cd09739:cas6f Type: other Location: 9984-10547 bp CRISPR array Location: 10731-11598 bp Num of repeats: 15 Spacers: s15-s28 CRISPR array Location: 10731-11598 bp Num of repeats: 15 Spacers: s15-s28 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1280-2148 bp]: array | spacers
           [Locus range 10731-11598 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABDVE010000065.1 Pseudomonas aeruginosa strain 10-99 CLFPDJDD_65, whole genome shotgun sequence

⇒Summary: seq-len = 12146 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10312-11420 bp Zoom in on locus 1 x19 CRISPR array Location: 10312-11420 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 10312-11420 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10312-11420 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)