CRISPRone

CRISPRone report for GCA_015317915.1_ASM1531791v1

♦ Seq 1: JABDVG010000010.1 Pseudomonas aeruginosa strain 10-58 NFJEKNMK_10, whole genome shotgun sequence

⇒Summary: seq-len = 127323 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 106301-117340 bp Zoom in on locus 1 x30 x12 CRISPR array Location: 106301-108069 bp Num of repeats: 30 Spacers: s1-s29 CRISPR array Location: 106301-108069 bp Num of repeats: 30 Spacers: s1-s29 Gene: cd09718:cas1 Type: universal Location: 108330-109304 bp Gene: COG1203:cas3 Type: Type-I Location: 109301-112531 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 112589-113893 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 113880-114863 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 114874-115902 bp Gene: cd09739:cas6f Type: other Location: 115906-116469 bp CRISPR array Location: 116653-117340 bp Num of repeats: 12 Spacers: s30-s40 CRISPR array Location: 116653-117340 bp Num of repeats: 12 Spacers: s30-s40 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 106301-108069 bp]: array | spacers
           [Locus range 116653-117340 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABDVG010000005.1 Pseudomonas aeruginosa strain 10-58 NFJEKNMK_5, whole genome shotgun sequence

⇒Summary: seq-len = 197212 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53371-62826 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 53371-54447 bp Gene: unk Type: unknown Location: 55258-55539 bp Gene: unk Type: unknown Location: 55592-55810 bp Gene: unk Type: unknown Location: 56216-56797 bp Gene: pfam13280:WYL Type: other Location: 56811-57686 bp Gene: unk Type: unknown Location: 57816-59396 bp Gene: unk Type: unknown Location: 59420-60067 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 60460-62826 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)