CRISPRone

CRISPRone report for GCA_015351775.1_ASM1535177v1

♦ Seq 1: JADKQN010000002.1 Clostridioides difficile strain CDI-18 20170311_2_length_400113, whole genome shotgun sequence

⇒Summary: seq-len = 400113 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6009-6429 bp 2 Locus 2: 214572-214864 bp Zoom in on locus 1 x7 Zoom in on locus 2 x5 CRISPR array Location: 6009-6429 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 6009-6429 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 214572-214864 bp Num of repeats: 5 Spacers: s7-s10 CRISPR array Location: 214572-214864 bp Num of repeats: 5 Spacers: s7-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6009-6429 bp]: array | spacers
           [Locus range 214572-214864 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JADKQN010000001.1 Clostridioides difficile strain CDI-18 20170311_1_length_625499, whole genome shotgun sequence

⇒Summary: seq-len = 625499 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2924-3675 bp 2 Locus 2: 193064-205120 bp 3 Locus 3: 360575-360737 bp Zoom in on locus 1 x12 Zoom in on locus 2 x46 Zoom in on locus 3 x3 CRISPR array Location: 2924-3675 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 2924-3675 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09652:cas6 Type: other Location: 193064-193759 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 193771-195510 bp Gene: pfam05107:cas7b Type: Type-I Location: 195503-196492 bp Gene: cd09693:cas5 Type: Type-I Location: 196494-197234 bp Gene: cd09641:cas3HD Type: Type-I Location: 197258-199816 bp CRISPR array Location: 200006-203008 bp Num of repeats: 46 Spacers: s12-s56 CRISPR array Location: 200006-203008 bp Num of repeats: 46 Spacers: s12-s56 Gene: pfam01930:cas4 Type: Type-I Location: 203092-203586 bp Gene: cd09722:cas1 Type: universal Location: 203612-204619 bp Gene: cd09725:cas2 Type: universal Location: 204830-205120 bp CRISPR array Location: 360575-360737 bp Num of repeats: 3 Spacers: s57-s58 CRISPR array Location: 360575-360737 bp Num of repeats: 3 Spacers: s57-s58 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2924-3675 bp]: array | spacers
           [Locus range 200006-203008 bp]: array | spacers
           [Locus range 360575-360737 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JADKQN010000005.1 Clostridioides difficile strain CDI-18 20170311_5_length_235770, whole genome shotgun sequence

⇒Summary: seq-len = 235770 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 158785-166650 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 158785-161193 bp Gene: cd09693:cas5 Type: Type-I Location: 161220-162017 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 162033-163046 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 163066-164541 bp Gene: pfam01881:cas6 Type: other Location: 164546-165283 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 165541-166650 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JADKQN010000018.1 Clostridioides difficile strain CDI-18 20170311_18_length_91704, whole genome shotgun sequence

⇒Summary: seq-len = 91704 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53091-53451 bp Zoom in on locus 1 x6 CRISPR array Location: 53091-53451 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 53091-53451 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53091-53451 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JADKQN010000014.1 Clostridioides difficile strain CDI-18 20170311_14_length_106794, whole genome shotgun sequence

⇒Summary: seq-len = 106794 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 102122-102680 bp Zoom in on locus 1 x9 CRISPR array Location: 102122-102680 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 102122-102680 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 102122-102680 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JADKQN010000008.1 Clostridioides difficile strain CDI-18 20170311_8_length_153675, whole genome shotgun sequence

⇒Summary: seq-len = 153675 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17807-18034 bp Zoom in on locus 1 x4 CRISPR array Location: 17807-18034 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 17807-18034 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17807-18034 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)