CRISPRone

CRISPRone report for GCA_015351855.1_ASM1535185v1

♦ Seq 1: JADKQO010000083.1 Clostridioides difficile strain CDI-17 20170261_83_length_11952, whole genome shotgun sequence

⇒Summary: seq-len = 11952 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 93-11680 bp Zoom in on locus 1 x39 Gene: cd09652:cas6 Type: other Location: 93-788 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 800-2539 bp Gene: pfam05107:cas7b Type: Type-I Location: 2532-3521 bp Gene: cd09693:cas5 Type: Type-I Location: 3523-4263 bp Gene: cd09641:cas3HD Type: Type-I Location: 4287-6845 bp CRISPR array Location: 7035-9568 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 7035-9568 bp Num of repeats: 39 Spacers: s1-s38 Gene: pfam01930:cas4 Type: Type-I Location: 9652-10146 bp Gene: cd09722:cas1 Type: universal Location: 10172-11179 bp Gene: cd09725:cas2 Type: universal Location: 11390-11680 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7035-9568 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JADKQO010000042.1 Clostridioides difficile strain CDI-17 20170261_42_length_34861, whole genome shotgun sequence

⇒Summary: seq-len = 34861 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28112-34600 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 28112-30520 bp Gene: cd09693:cas5 Type: Type-I Location: 30547-31344 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31360-32373 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32392-33858 bp Gene: pfam01881:cas6 Type: other Location: 33863-34600 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JADKQO010000048.1 Clostridioides difficile strain CDI-17 20170261_48_length_29030, whole genome shotgun sequence

⇒Summary: seq-len = 29030 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7205-18903 bp Zoom in on locus 1 x33 CRISPR array Location: 7205-9326 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 7205-9326 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 9510-9776 bp Gene: cd09722:cas1 Type: universal Location: 9779-10759 bp Gene: pfam01930:cas4 Type: Type-I Location: 10762-11280 bp Gene: COG1203:cas3 Type: Type-I Location: 11328-13649 bp Gene: cd09693:cas5 Type: Type-I Location: 13660-14361 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 14363-15277 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 15279-17129 bp Gene: pfam01881:cas6 Type: other Location: 17135-17872 bp Gene: pfam13280:WYL Type: other Location: 17950-18903 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7205-9326 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JADKQO010000028.1 Clostridioides difficile strain CDI-17 20170261_28_length_50460, whole genome shotgun sequence

⇒Summary: seq-len = 50460 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45958-46772 bp Zoom in on locus 1 x13 CRISPR array Location: 45958-46772 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 45958-46772 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45958-46772 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JADKQO010000023.1 Clostridioides difficile strain CDI-17 20170261_23_length_56789, whole genome shotgun sequence

⇒Summary: seq-len = 56789 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53553-54701 bp Zoom in on locus 1 x18 CRISPR array Location: 53553-54701 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 53553-54701 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53553-54701 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JADKQO010000013.1 Clostridioides difficile strain CDI-17 20170261_13_length_83750, whole genome shotgun sequence

⇒Summary: seq-len = 83750 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24158-24784 bp Zoom in on locus 1 x10 CRISPR array Location: 24158-24784 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 24158-24784 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 24158-24784 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: JADKQO010000067.1 Clostridioides difficile strain CDI-17 20170261_67_length_18389, whole genome shotgun sequence

⇒Summary: seq-len = 18389 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7776-10574 bp Zoom in on locus 1 x43 CRISPR array Location: 7776-10574 bp Num of repeats: 43 Spacers: s1-s42 CRISPR array Location: 7776-10574 bp Num of repeats: 43 Spacers: s1-s42 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7776-10574 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)