CRISPRone

CRISPRone report for GCA_015352115.1_ASM1535211v1

♦ Seq 1: JADKQB010000002.1 Clostridioides difficile strain CDI-30 20170878_2_length_377479, whole genome shotgun sequence

⇒Summary: seq-len = 377479 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44274-44632 bp 2 Locus 2: 117914-126235 bp 3 Locus 3: 289506-290123 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 44274-44632 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 44274-44632 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 117914-119023 bp Gene: unk Type: unknown Location: 119457-119633 bp Gene: pfam01881:cas6 Type: other Location: 119734-120471 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120476-121951 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 121971-122987 bp Gene: cd09693:cas5 Type: Type-I Location: 123003-123800 bp Gene: cd09641:cas3HD Type: Type-I Location: 123827-126235 bp CRISPR array Location: 289506-290123 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 289506-290123 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44274-44632 bp]: array | spacers
           [Locus range 289506-290123 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JADKQB010000006.1 Clostridioides difficile strain CDI-30 20170878_6_length_217032, whole genome shotgun sequence

⇒Summary: seq-len = 217032 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91697-92255 bp Zoom in on locus 1 x9 CRISPR array Location: 91697-92255 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 91697-92255 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91697-92255 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JADKQB010000001.1 Clostridioides difficile strain CDI-30 20170878_1_length_530984, whole genome shotgun sequence

⇒Summary: seq-len = 530984 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44753-44847 bp 2 Locus 2: 267113-278158 bp Zoom in on locus 1 x2 Zoom in on locus 2 x24 CRISPR array Location: 44753-44847 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 44753-44847 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 267113-268000 bp Gene: pfam01881:cas6 Type: other Location: 268078-268815 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 268821-270671 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 270673-271587 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 271589-272290 bp Gene: COG1203:cas3 Type: Type-I Location: 272301-274622 bp Gene: pfam01930:cas4 Type: Type-I Location: 274637-275188 bp Gene: cd09722:cas1 Type: universal Location: 275191-276171 bp Gene: cd09725:cas2 Type: universal Location: 276174-276440 bp CRISPR array Location: 276624-278158 bp Num of repeats: 24 Spacers: s2-s24 CRISPR array Location: 276624-278158 bp Num of repeats: 24 Spacers: s2-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44753-44847 bp]: array | spacers
           [Locus range 276624-278158 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JADKQB010000011.1 Clostridioides difficile strain CDI-30 20170878_11_length_157520, whole genome shotgun sequence

⇒Summary: seq-len = 157520 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47037-47198 bp Zoom in on locus 1 x3 CRISPR array Location: 47037-47198 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 47037-47198 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 47037-47198 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JADKQB010000009.1 Clostridioides difficile strain CDI-30 20170878_9_length_190860, whole genome shotgun sequence

⇒Summary: seq-len = 190860 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 171652-172408 bp Zoom in on locus 1 x12 CRISPR array Location: 171652-172408 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 171652-172408 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 171652-172408 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JADKQB010000019.1 Clostridioides difficile strain CDI-30 20170878_19_length_68502, whole genome shotgun sequence

⇒Summary: seq-len = 68502 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3601-4751 bp Zoom in on locus 1 x18 CRISPR array Location: 3601-4751 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 3601-4751 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3601-4751 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)