CRISPRone

CRISPRone report for GCA_015352285.1_ASM1535228v1

♦ Seq 1: JADKQW010000022.1 Clostridioides difficile strain CDI-09 20161320_22_length_62914, whole genome shotgun sequence

⇒Summary: seq-len = 62914 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26500-26724 bp Zoom in on locus 1 x4 CRISPR array Location: 26500-26724 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 26500-26724 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 26500-26724 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JADKQW010000034.1 Clostridioides difficile strain CDI-09 20161320_34_length_21331, whole genome shotgun sequence

⇒Summary: seq-len = 21331 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15987-16149 bp Zoom in on locus 1 x3 CRISPR array Location: 15987-16149 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 15987-16149 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 15987-16149 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JADKQW010000006.1 Clostridioides difficile strain CDI-09 20161320_6_length_203193, whole genome shotgun sequence

⇒Summary: seq-len = 203193 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 148840-149261 bp Zoom in on locus 1 x7 CRISPR array Location: 148840-149261 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 148840-149261 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 148840-149261 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JADKQW010000004.1 Clostridioides difficile strain CDI-09 20161320_4_length_277880, whole genome shotgun sequence

⇒Summary: seq-len = 277880 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 249112-260488 bp Zoom in on locus 1 x28 CRISPR array Location: 249112-250923 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 249112-250923 bp Num of repeats: 28 Spacers: s1-s27 Gene: cd09725:cas2 Type: universal Location: 251107-251373 bp Gene: cd09722:cas1 Type: universal Location: 251376-252356 bp Gene: pfam01930:cas4 Type: Type-I Location: 252359-252877 bp Gene: COG1203:cas3 Type: Type-I Location: 252925-255246 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 255257-255958 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 255960-256874 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 256876-258753 bp Gene: pfam01881:cas6 Type: other Location: 258759-259553 bp Gene: pfam13280:WYL Type: other Location: 259574-260488 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 249112-250923 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JADKQW010000002.1 Clostridioides difficile strain CDI-09 20161320_2_length_393340, whole genome shotgun sequence

⇒Summary: seq-len = 393340 bp; # of CRISPR array = 6; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53407-59504 bp 2 Locus 2: 94072-94823 bp 3 Locus 3: 112896-113918 bp Zoom in on locus 1 x8 x3 x4 x6 Zoom in on locus 2 x12 Zoom in on locus 3 x16 CRISPR array Location: 53407-53894 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 53407-53894 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 55694-55854 bp Num of repeats: 3 Spacers: s8-s9 CRISPR array Location: 55694-55854 bp Num of repeats: 3 Spacers: s8-s9 CRISPR array Location: 56089-56314 bp Num of repeats: 4 Spacers: s10-s12 CRISPR array Location: 56089-56314 bp Num of repeats: 4 Spacers: s10-s12 CRISPR array Location: 59148-59504 bp Num of repeats: 6 Spacers: s13-s17 CRISPR array Location: 59148-59504 bp Num of repeats: 6 Spacers: s13-s17 CRISPR array Location: 94072-94823 bp Num of repeats: 12 Spacers: s18-s28 CRISPR array Location: 94072-94823 bp Num of repeats: 12 Spacers: s18-s28 CRISPR array Location: 112896-113918 bp Num of repeats: 16 Spacers: s29-s43 CRISPR array Location: 112896-113918 bp Num of repeats: 16 Spacers: s29-s43 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53407-53894 bp]: array | spacers
           [Locus range 55694-55854 bp]: array | spacers
           [Locus range 56089-56314 bp]: array | spacers
           [Locus range 59148-59504 bp]: array | spacers
           [Locus range 94072-94823 bp]: array | spacers
           [Locus range 112896-113918 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JADKQW010000005.1 Clostridioides difficile strain CDI-09 20161320_5_length_276858, whole genome shotgun sequence

⇒Summary: seq-len = 276858 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113529-121404 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 113529-114638 bp Gene: pfam01881:cas6 Type: other Location: 114897-115634 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 115639-117114 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 117134-118147 bp Gene: cd09693:cas5 Type: Type-I Location: 118163-118969 bp Gene: cd09641:cas3HD Type: Type-I Location: 118996-121404 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: JADKQW010000001.1 Clostridioides difficile strain CDI-09 20161320_1_length_482120, whole genome shotgun sequence

⇒Summary: seq-len = 482120 bp; # of CRISPR array = 2; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-3036 bp 2 Locus 2: 81145-81238 bp 3 Locus 3: 289413-289905 bp Zoom in on locus 1 Zoom in on locus 2 x2 Zoom in on locus 3 x8 Gene: cas14:cas14 Type: Type-V Location: 1-135 bp Gene: COG2378:WYL Type: other Location: 774-1685 bp Gene: unk Type: unknown Location: 1800-2267 bp Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 2437-3036 bp CRISPR array Location: 81145-81238 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 81145-81238 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 289413-289905 bp Num of repeats: 8 Spacers: s2-s8 CRISPR array Location: 289413-289905 bp Num of repeats: 8 Spacers: s2-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 81145-81238 bp]: array | spacers
           [Locus range 289413-289905 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: JADKQW010000019.1 Clostridioides difficile strain CDI-09 20161320_19_length_69621, whole genome shotgun sequence

⇒Summary: seq-len = 69621 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45245-45936 bp Zoom in on locus 1 x11 CRISPR array Location: 45245-45936 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 45245-45936 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45245-45936 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)