CRISPRone

CRISPRone report for GCA_015352395.1_ASM1535239v1

♦ Seq 1: JADKRC010000028.1 Clostridioides difficile strain CDI-03 20161136_28_length_29507, whole genome shotgun sequence

⇒Summary: seq-len = 29507 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18564-20749 bp Zoom in on locus 1 x4 x3 CRISPR array Location: 18564-18789 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 18564-18789 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 20589-20749 bp Num of repeats: 3 Spacers: s4-s5 CRISPR array Location: 20589-20749 bp Num of repeats: 3 Spacers: s4-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18564-18789 bp]: array | spacers
           [Locus range 20589-20749 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JADKRC010000021.1 Clostridioides difficile strain CDI-03 20161136_21_length_69014, whole genome shotgun sequence

⇒Summary: seq-len = 69014 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22360-24098 bp Zoom in on locus 1 x27 CRISPR array Location: 22360-24098 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 22360-24098 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22360-24098 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JADKRC010000004.1 Clostridioides difficile strain CDI-03 20161136_4_length_252369, whole genome shotgun sequence

⇒Summary: seq-len = 252369 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 57320-58601 bp 2 Locus 2: 233257-233944 bp Zoom in on locus 1 x20 Zoom in on locus 2 x11 CRISPR array Location: 57320-58601 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 57320-58601 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 233257-233944 bp Num of repeats: 11 Spacers: s20-s29 CRISPR array Location: 233257-233944 bp Num of repeats: 11 Spacers: s20-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 57320-58601 bp]: array | spacers
           [Locus range 233257-233944 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JADKRC010000002.1 Clostridioides difficile strain CDI-03 20161136_2_length_427886, whole genome shotgun sequence

⇒Summary: seq-len = 427886 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 165094-175340 bp Zoom in on locus 1 x11 Gene: pfam13280:WYL Type: other Location: 165094-166008 bp Gene: pfam01881:cas6 Type: other Location: 166086-166823 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 166829-168706 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 168708-169622 bp Gene: cd09693:cas5 Type: Type-I Location: 169624-170325 bp Gene: COG1203:cas3 Type: Type-I Location: 170336-172657 bp Gene: pfam01930:cas4 Type: Type-I Location: 172672-173223 bp Gene: cd09722:cas1 Type: universal Location: 173226-174206 bp Gene: cd09725:cas2 Type: universal Location: 174209-174475 bp CRISPR array Location: 174659-175340 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 174659-175340 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 174659-175340 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JADKRC010000008.1 Clostridioides difficile strain CDI-03 20161136_8_length_220826, whole genome shotgun sequence

⇒Summary: seq-len = 220826 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30011-30173 bp Zoom in on locus 1 x3 CRISPR array Location: 30011-30173 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 30011-30173 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30011-30173 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JADKRC010000001.1 Clostridioides difficile strain CDI-03 20161136_1_length_504524, whole genome shotgun sequence

⇒Summary: seq-len = 504524 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 258576-259001 bp 2 Locus 2: 421421-429286 bp 3 Locus 3: 502567-502661 bp Zoom in on locus 1 x7 Zoom in on locus 2 Zoom in on locus 3 x2 CRISPR array Location: 258576-259001 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 258576-259001 bp Num of repeats: 7 Spacers: s1-s6 Gene: cd09641:cas3HD Type: Type-I Location: 421421-423829 bp Gene: cd09693:cas5 Type: Type-I Location: 423856-424653 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 424669-425682 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 425702-427177 bp Gene: pfam01881:cas6 Type: other Location: 427182-427919 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 428177-429286 bp CRISPR array Location: 502567-502661 bp Num of repeats: 2 Spacers: s7-s7 CRISPR array Location: 502567-502661 bp Num of repeats: 2 Spacers: s7-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 258576-259001 bp]: array | spacers
           [Locus range 502567-502661 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: JADKRC010000012.1 Clostridioides difficile strain CDI-03 20161136_12_length_125673, whole genome shotgun sequence

⇒Summary: seq-len = 125673 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5987-6410 bp Zoom in on locus 1 x7 CRISPR array Location: 5987-6410 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 5987-6410 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5987-6410 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: JADKRC010000003.1 Clostridioides difficile strain CDI-03 20161136_3_length_285281, whole genome shotgun sequence

⇒Summary: seq-len = 285281 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252130-252358 bp Zoom in on locus 1 x4 CRISPR array Location: 252130-252358 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 252130-252358 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 252130-252358 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)