CRISPRone

CRISPRone report for GCA_015548825.1_ASM1554882v1

♦ Seq 1: JADMXT010000020.1 Bacteroides fragilis strain BSD2780061687_150420_F6 NODE_20_length_54387_cov_23.9923, whole genome shotgun sequence

⇒Summary: seq-len = 54387 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19746-21868 bp Zoom in on locus 1 x6 CRISPR array Location: 19746-20094 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 19746-20094 bp Num of repeats: 6 Spacers: s1-s5 Gene: cd09725:cas2 Type: universal Location: 20307-20570 bp Gene: cd09722:cas1 Type: universal Location: 20573-20812 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 20805-21185 bp Gene: cd09652:cas6 Type: other Location: 21197-21868 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19746-20094 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JADMXT010000024.1 Bacteroides fragilis strain BSD2780061687_150420_F6 NODE_24_length_41697_cov_22.9003, whole genome shotgun sequence

⇒Summary: seq-len = 41697 bp; # of CRISPR array = 0; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28095-41338 bp Zoom in on locus 1 Gene: cls000004:cas6 Type: other Location: 28095-28826 bp Gene: unk Type: unknown Location: 28844-29470 bp Gene: unk Type: unknown Location: 29446-30225 bp Gene: cash17:cash17 Type: Type- Location: 30270-31697 bp Gene: unk Type: unknown Location: 31694-32173 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 32187-33596 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 33601-35403 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 35396-36535 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 36555-37394 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 37407-37817 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 37814-38764 bp Gene: cd09634:cas1 Type: universal Location: 38784-41054 bp Gene: cd09725:cas2 Type: universal Location: 41048-41338 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JADMXT010000013.1 Bacteroides fragilis strain BSD2780061687_150420_F6 NODE_13_length_144334_cov_24.3392, whole genome shotgun sequence

⇒Summary: seq-len = 144334 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 199-1420 bp Zoom in on locus 1 x18 CRISPR array Location: 199-1420 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 199-1420 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 199-1420 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JADMXT010000002.1 Bacteroides fragilis strain BSD2780061687_150420_F6 NODE_2_length_558213_cov_33.0932, whole genome shotgun sequence

⇒Summary: seq-len = 558213 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 427099-430712 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 427099-427998 bp Gene: unk Type: unknown Location: 427995-429260 bp Gene: unk Type: unknown Location: 429268-430041 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 430044-430712 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)