CRISPRone

CRISPRone report for GCA_015553495.1_ASM1555349v1

♦ Seq 1: JADNGU010000002.1 Bacteroides fragilis strain 1001285H_161024_D4 NODE_2_length_544818_cov_20.1437, whole genome shotgun sequence

⇒Summary: seq-len = 544818 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 418342-421955 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 418342-419241 bp Gene: unk Type: unknown Location: 419238-420503 bp Gene: unk Type: unknown Location: 420511-421284 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 421287-421955 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JADNGU010000007.1 Bacteroides fragilis strain 1001285H_161024_D4 NODE_7_length_239963_cov_23.24, whole genome shotgun sequence

⇒Summary: seq-len = 239963 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 230960-239066 bp Zoom in on locus 1 x17 antiRepeat Location: 230960-231005 bp Strand: + Match length: 26 bp Mismatch: 21 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 231073-235383 bp Gene: unk Type: unknown Location: 235399-235923 bp Gene: unk Type: unknown Location: 235990-236298 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 236418-237350 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 237354-237686 bp CRISPR array Location: 237795-239066 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 237795-239066 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 237795-239066 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JADNGU010000001.1 Bacteroides fragilis strain 1001285H_161024_D4 NODE_1_length_776247_cov_14.3717, whole genome shotgun sequence

⇒Summary: seq-len = 776247 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 143226-157869 bp Zoom in on locus 1 x15 CRISPR array Location: 143226-144241 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 143226-144241 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09725:cas2 Type: universal Location: 144689-144979 bp Gene: cd09634:cas1 Type: universal Location: 144973-147243 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 147263-148207 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 148210-148620 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 148633-149472 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 149492-150631 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 150624-152426 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 152431-153840 bp Gene: unk Type: unknown Location: 153854-154333 bp Gene: cash17:cash17 Type: Type- Location: 154330-155757 bp Gene: unk Type: unknown Location: 155802-156581 bp Gene: unk Type: unknown Location: 156557-157183 bp Gene: cls000004:cas6 Type: other Location: 157201-157869 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 143226-144241 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)