CRISPRone

CRISPRone report for GCA_015556305.1_ASM1555630v1

♦ Seq 1: JADNMB010000001.1 Bacteroides fragilis strain J1101437_171009_F3 NODE_1_length_684676_cov_17.4367, whole genome shotgun sequence

⇒Summary: seq-len = 684676 bp; # of CRISPR array = 1; # of cas gene = 13  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 118503-134564 bp 2 Locus 2: 666375-676504 bp Zoom in on locus 1 x35 Zoom in on locus 2 CRISPR array Location: 118503-120936 bp Num of repeats: 35 Spacers: s1-s34 CRISPR array Location: 118503-120936 bp Num of repeats: 35 Spacers: s1-s34 Gene: cd09725:cas2 Type: universal Location: 121384-121674 bp Gene: cd09634:cas1 Type: universal Location: 121668-123938 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 123958-124902 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 124905-125315 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 125328-126167 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 126187-127326 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 127319-129121 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 129126-130535 bp Gene: unk Type: unknown Location: 130549-131028 bp Gene: cash17:cash17 Type: Type- Location: 131025-132452 bp Gene: unk Type: unknown Location: 132497-133276 bp Gene: unk Type: unknown Location: 133252-133878 bp Gene: cls000004:cas6 Type: other Location: 133896-134564 bp Gene: cd09710:cas3 Type: Subtype-I-D Location: 666375-672515 bp Gene: pfam13280:WYL Type: other Location: 672554-673564 bp Gene: unk Type: unknown Location: 674330-674506 bp Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 674843-676504 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 118503-120936 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JADNMB010000004.1 Bacteroides fragilis strain J1101437_171009_F3 NODE_4_length_462145_cov_23.1278, whole genome shotgun sequence

⇒Summary: seq-len = 462145 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 49079-53645 bp 2 Locus 2: 337045-340658 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 49079-49852 bp Gene: mkCas0115:csx3 Type: other Location: 49834-50367 bp Gene: cd09750:csa5gr11 Type: Subtype-I-A Location: 50367-53645 bp Gene: pfam13280:WYL Type: other Location: 337045-337944 bp Gene: unk Type: unknown Location: 337941-339206 bp Gene: unk Type: unknown Location: 339214-339987 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 339990-340658 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JADNMB010000014.1 Bacteroides fragilis strain J1101437_171009_F3 NODE_14_length_142621_cov_27.574, whole genome shotgun sequence

⇒Summary: seq-len = 142621 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 133447-141598 bp Zoom in on locus 1 x19 Gene: cd09643:cas9 Type: Subtype-II-C Location: 133447-137757 bp Gene: unk Type: unknown Location: 137773-138297 bp Gene: unk Type: unknown Location: 138364-138672 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 138792-139724 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 139728-140060 bp CRISPR array Location: 140169-141598 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 140169-141598 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 140169-141598 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)