CRISPRone

CRISPRone report for GCA_015558985.1_ASM1555898v1

♦ Seq 1: JADMPD010000009.1 Bacteroides fragilis strain BSD2780120874b_170522_C6 NODE_9_length_172336_cov_16.4343, whole genome shotgun sequence

⇒Summary: seq-len = 172336 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56369-71508 bp Zoom in on locus 1 x21 Gene: cls000004:cas6 Type: other Location: 56369-57100 bp Gene: unk Type: unknown Location: 57118-57744 bp Gene: unk Type: unknown Location: 57720-58499 bp Gene: cash17:cash17 Type: Type- Location: 58544-59971 bp Gene: unk Type: unknown Location: 59968-60447 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 60461-61870 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 61875-63677 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 63670-64809 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 64829-65668 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 65681-66091 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 66088-67038 bp Gene: cd09634:cas1 Type: universal Location: 67058-69328 bp Gene: cd09725:cas2 Type: universal Location: 69322-69612 bp CRISPR array Location: 70060-71508 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 70060-71508 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 70060-71508 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JADMPD010000004.1 Bacteroides fragilis strain BSD2780120874b_170522_C6 NODE_4_length_208910_cov_22.5781, whole genome shotgun sequence

⇒Summary: seq-len = 208910 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97179-100792 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 97179-98078 bp Gene: unk Type: unknown Location: 98075-99340 bp Gene: unk Type: unknown Location: 99348-100121 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 100124-100792 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JADMPD010000028.1 Bacteroides fragilis strain BSD2780120874b_170522_C6 NODE_28_length_70584_cov_16.7312, whole genome shotgun sequence

⇒Summary: seq-len = 70584 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29062-37596 bp Zoom in on locus 1 x3 x7 Gene: cd09652:cas6 Type: other Location: 29062-29733 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 29745-30308 bp Gene: COG1203:cas3 Type: Type-I Location: 30298-32457 bp Gene: mkCas0111:cas8b6 Type: Subtype-I-B Location: 32461-33786 bp Gene: mkCas0088:cas7 Type: Subtype-I-B Location: 33799-34857 bp Gene: pfam01930:cas4 Type: Type-I Location: 34922-35434 bp Gene: cd09722:cas1 Type: universal Location: 35431-36444 bp Gene: cd09725:cas2 Type: universal Location: 36447-36710 bp CRISPR array Location: 36923-37080 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 36923-37080 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 37181-37596 bp Num of repeats: 7 Spacers: s3-s8 CRISPR array Location: 37181-37596 bp Num of repeats: 7 Spacers: s3-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36923-37080 bp]: array | spacers
           [Locus range 37181-37596 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)