CRISPRone

CRISPRone report for GCA_015626645.1_ASM1562664v1

♦ Seq 1: WODM01000107.1 Pseudomonas aeruginosa strain CRE102 CRE102_S11_L001_NODE_107, whole genome shotgun sequence

⇒Summary: seq-len = 11348 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 388-10595 bp Zoom in on locus 1 x17 x10 CRISPR array Location: 388-1378 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 388-1378 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09718:cas1 Type: universal Location: 1638-2612 bp Gene: COG1203:cas3 Type: Type-I Location: 2609-5839 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5897-7201 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7188-8171 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8182-9210 bp Gene: cd09739:cas6f Type: other Location: 9214-9777 bp CRISPR array Location: 10027-10595 bp Num of repeats: 10 Spacers: s17-s25 CRISPR array Location: 10027-10595 bp Num of repeats: 10 Spacers: s17-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 388-1378 bp]: array | spacers
           [Locus range 10027-10595 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: WODM01000032.1 Pseudomonas aeruginosa strain CRE102 CRE102_S11_L001_NODE_32, whole genome shotgun sequence

⇒Summary: seq-len = 66550 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 389-1137 bp Zoom in on locus 1 x13 CRISPR array Location: 389-1137 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 389-1137 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 389-1137 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: WODM01000055.1 Pseudomonas aeruginosa strain CRE102 CRE102_S11_L001_NODE_55, whole genome shotgun sequence

⇒Summary: seq-len = 37407 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 424-811 bp Zoom in on locus 1 x7 CRISPR array Location: 424-811 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 424-811 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 424-811 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)