CRISPRone

CRISPRone report for GCA_015626695.1_ASM1562669v1

♦ Seq 1: WODN01000002.1 Pseudomonas aeruginosa strain CRE98 CRE98_S10_L001_NODE_2, whole genome shotgun sequence

⇒Summary: seq-len = 400120 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 337187-337816 bp Zoom in on locus 1 x11 CRISPR array Location: 337187-337816 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 337187-337816 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 337187-337816 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: WODN01000067.1 Pseudomonas aeruginosa strain CRE98 CRE98_S10_L001_NODE_67, whole genome shotgun sequence

⇒Summary: seq-len = 12228 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135-11583 bp Zoom in on locus 1 x16 x27 CRISPR array Location: 135-1060 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 135-1060 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09739:cas6f Type: other Location: 1244-1807 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1811-2839 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2850-3833 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3820-5121 bp Gene: COG1203:cas3 Type: Type-I Location: 5532-8762 bp Gene: cd09718:cas1 Type: universal Location: 8759-9733 bp CRISPR array Location: 9994-11583 bp Num of repeats: 27 Spacers: s16-s41 CRISPR array Location: 9994-11583 bp Num of repeats: 27 Spacers: s16-s41 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 135-1060 bp]: array | spacers
           [Locus range 9994-11583 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: WODN01000041.1 Pseudomonas aeruginosa strain CRE98 CRE98_S10_L001_NODE_41, whole genome shotgun sequence

⇒Summary: seq-len = 53684 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 156-723 bp Zoom in on locus 1 x10 CRISPR array Location: 156-723 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 156-723 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 156-723 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)