CRISPRone

CRISPRone report for GCA_015627075.1_ASM1562707v1

♦ Seq 1: WOEG01000062.1 Pseudomonas aeruginosa strain NEF23 NEF23_S7_L001_NODE_62, whole genome shotgun sequence

⇒Summary: seq-len = 34831 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 424-811 bp Zoom in on locus 1 x7 CRISPR array Location: 424-811 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 424-811 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 424-811 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: WOEG01000100.1 Pseudomonas aeruginosa strain NEF23 NEF23_S7_L001_NODE_100, whole genome shotgun sequence

⇒Summary: seq-len = 11348 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 754-10961 bp Zoom in on locus 1 x10 x17 CRISPR array Location: 754-1323 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 754-1323 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09739:cas6f Type: other Location: 1572-2135 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2139-3167 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 3178-4161 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4148-5452 bp Gene: COG1203:cas3 Type: Type-I Location: 5510-8740 bp Gene: cd09718:cas1 Type: universal Location: 8737-9711 bp CRISPR array Location: 9972-10961 bp Num of repeats: 17 Spacers: s10-s25 CRISPR array Location: 9972-10961 bp Num of repeats: 17 Spacers: s10-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 754-1323 bp]: array | spacers
           [Locus range 9972-10961 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: WOEG01000003.1 Pseudomonas aeruginosa strain NEF23 NEF23_S7_L001_NODE_3, whole genome shotgun sequence

⇒Summary: seq-len = 212998 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19761-20508 bp Zoom in on locus 1 x13 CRISPR array Location: 19761-20508 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 19761-20508 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19761-20508 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)