CRISPRone

CRISPRone report for GCA_015686615.1_ASM1568661v1

♦ Seq 1: JADPMU010000014.1 Clostridioides difficile strain MAR225 MAR225_14, whole genome shotgun sequence

⇒Summary: seq-len = 622407 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 194133-194228 bp 2 Locus 2: 406837-406998 bp 3 Locus 3: 516257-516877 bp 4 Locus 4: 607726-610781 bp Zoom in on locus 1 x2 Zoom in on locus 2 x3 Zoom in on locus 3 x10 Zoom in on locus 4 x4 x3 CRISPR array Location: 194133-194228 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 194133-194228 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 406837-406998 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 406837-406998 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 516257-516877 bp Num of repeats: 10 Spacers: s4-s12 CRISPR array Location: 516257-516877 bp Num of repeats: 10 Spacers: s4-s12 CRISPR array Location: 607726-607953 bp Num of repeats: 4 Spacers: s13-s15 CRISPR array Location: 607726-607953 bp Num of repeats: 4 Spacers: s13-s15 CRISPR array Location: 610620-610781 bp Num of repeats: 3 Spacers: s16-s17 CRISPR array Location: 610620-610781 bp Num of repeats: 3 Spacers: s16-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 194133-194228 bp]: array | spacers
           [Locus range 406837-406998 bp]: array | spacers
           [Locus range 516257-516877 bp]: array | spacers
           [Locus range 607726-607953 bp]: array | spacers
           [Locus range 610620-610781 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JADPMU010000015.1 Clostridioides difficile strain MAR225 MAR225_15, whole genome shotgun sequence

⇒Summary: seq-len = 293537 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 128883-129303 bp Zoom in on locus 1 x7 CRISPR array Location: 128883-129303 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 128883-129303 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 128883-129303 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JADPMU010000016.1 Clostridioides difficile strain MAR225 MAR225_16, whole genome shotgun sequence

⇒Summary: seq-len = 849973 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 600127-611085 bp 2 Locus 2: 662295-672018 bp 3 Locus 3: 751805-752030 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 600127-600633 bp Gene: unk Type: unknown Location: 600792-601460 bp Gene: unk Type: unknown Location: 601873-602379 bp Gene: cd06127:DEDDh Type: Type-I Location: 602751-603788 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 610600-611085 bp Gene: cd09641:cas3HD Type: Type-I Location: 662295-664703 bp Gene: cd09693:cas5 Type: Type-I Location: 664730-665527 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 665543-666556 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 666576-668042 bp Gene: pfam01881:cas6 Type: other Location: 668047-668784 bp Gene: unk Type: unknown Location: 669098-669556 bp Gene: cas14:cas14 Type: Type-V Location: 669584-670756 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 670909-672018 bp CRISPR array Location: 751805-752030 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 751805-752030 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 751805-752030 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)