CRISPRone

CRISPRone report for GCA_015686625.1_ASM1568662v1

♦ Seq 1: JADPMT010000019.1 Clostridioides difficile strain MAR272 MAR272_19, whole genome shotgun sequence

⇒Summary: seq-len = 850318 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 600063-611021 bp 2 Locus 2: 662231-671954 bp 3 Locus 3: 751741-752097 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x6 Gene: cd06127:DEDDh Type: Type-I Location: 600063-600569 bp Gene: unk Type: unknown Location: 600728-601396 bp Gene: unk Type: unknown Location: 601809-602315 bp Gene: cd06127:DEDDh Type: Type-I Location: 602687-603724 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 610536-611021 bp Gene: cd09641:cas3HD Type: Type-I Location: 662231-664639 bp Gene: cd09693:cas5 Type: Type-I Location: 664666-665463 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 665479-666492 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 666512-667978 bp Gene: pfam01881:cas6 Type: other Location: 667983-668720 bp Gene: unk Type: unknown Location: 669034-669492 bp Gene: cas14:cas14 Type: Type-V Location: 669520-670692 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 670845-671954 bp CRISPR array Location: 751741-752097 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 751741-752097 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 751741-752097 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JADPMT010000016.1 Clostridioides difficile strain MAR272 MAR272_16, whole genome shotgun sequence

⇒Summary: seq-len = 376582 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 194132-194227 bp Zoom in on locus 1 x2 CRISPR array Location: 194132-194227 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 194132-194227 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 194132-194227 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JADPMT010000017.1 Clostridioides difficile strain MAR272 MAR272_17, whole genome shotgun sequence

⇒Summary: seq-len = 244774 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29204-29365 bp 2 Locus 2: 138624-139244 bp 3 Locus 3: 230093-233148 bp Zoom in on locus 1 x3 Zoom in on locus 2 x10 Zoom in on locus 3 x4 x3 CRISPR array Location: 29204-29365 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 29204-29365 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 138624-139244 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 138624-139244 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 230093-230320 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 230093-230320 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 232987-233148 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 232987-233148 bp Num of repeats: 3 Spacers: s15-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29204-29365 bp]: array | spacers
           [Locus range 138624-139244 bp]: array | spacers
           [Locus range 230093-230320 bp]: array | spacers
           [Locus range 232987-233148 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JADPMT010000018.1 Clostridioides difficile strain MAR272 MAR272_18, whole genome shotgun sequence

⇒Summary: seq-len = 283687 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 119033-119453 bp Zoom in on locus 1 x7 CRISPR array Location: 119033-119453 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 119033-119453 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 119033-119453 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)