CRISPRone

CRISPRone report for GCA_015711455.1_ASM1571145v1

♦ Seq 1: JACHQX010000008.1 Pseudomonas aeruginosa strain LVP25 newlvp04_contig_9, whole genome shotgun sequence

⇒Summary: seq-len = 7010888 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2051047-2051495 bp 2 Locus 2: 3408150-3418455 bp Zoom in on locus 1 x8 Zoom in on locus 2 x17 x13 CRISPR array Location: 2051047-2051495 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 2051047-2051495 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3408150-3409136 bp Num of repeats: 17 Spacers: s8-s23 CRISPR array Location: 3408150-3409136 bp Num of repeats: 17 Spacers: s8-s23 Gene: pfam09618:cas6f Type: Subtype-I-F Location: 3409319-3409822 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 3409885-3410913 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 3410924-3411907 bp Gene: cd09735:cas8f Type: Subtype-I-F Location: 3412013-3413002 bp Gene: COG1203:cas3 Type: Type-I Location: 3412902-3416486 bp Gene: cd09718:cas1 Type: universal Location: 3416483-3417457 bp CRISPR array Location: 3417708-3418455 bp Num of repeats: 13 Spacers: s24-s35 CRISPR array Location: 3417708-3418455 bp Num of repeats: 13 Spacers: s24-s35 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2051047-2051495 bp]: array | spacers
           [Locus range 3408150-3409136 bp]: array | spacers
           [Locus range 3417708-3418455 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)