CRISPRone

CRISPRone report for GCA_015732535.1_ASM1573253v1

♦ Seq 1: CP021319.1 Clostridioides difficile strain DSM 101085 chromosome, complete genome

⇒Summary: seq-len = 4009385 bp; # of CRISPR array = 7; # of cas gene = 28  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1730818-1731898 bp 2 Locus 2: 2043647-2044666 bp 3 Locus 3: 2062732-2062892 bp 4 Locus 4: 2099226-2101270 bp 5 Locus 5: 2138773-2139456 bp 6 Locus 6: 2247359-2258025 bp 7 Locus 7: 2548657-2559610 bp 8 Locus 8: 2604592-2612919 bp 9 Locus 9: 3178986-3179277 bp 10 Locus 10: 3238192-3249368 bp Zoom in on locus 1 x17 Zoom in on locus 2 x16 Zoom in on locus 3 x3 Zoom in on locus 4 Zoom in on locus 5 x11 Zoom in on locus 6 x25 Zoom in on locus 7 Zoom in on locus 8 Zoom in on locus 9 x5 Zoom in on locus 10 x25 CRISPR array Location: 1730818-1731898 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 1730818-1731898 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 2043647-2044666 bp Num of repeats: 16 Spacers: s17-s31 CRISPR array Location: 2043647-2044666 bp Num of repeats: 16 Spacers: s17-s31 CRISPR array Location: 2062732-2062892 bp Num of repeats: 3 Spacers: s32-s33 CRISPR array Location: 2062732-2062892 bp Num of repeats: 3 Spacers: s32-s33 Gene: cd09718:cas1 Type: universal Location: 2099226-2100881 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2100893-2101270 bp CRISPR array Location: 2138773-2139456 bp Num of repeats: 11 Spacers: s34-s43 CRISPR array Location: 2138773-2139456 bp Num of repeats: 11 Spacers: s34-s43 Gene: cd09725:cas2 Type: universal Location: 2247359-2247649 bp Gene: cd09722:cas1 Type: universal Location: 2247860-2248867 bp Gene: pfam01930:cas4 Type: Type-I Location: 2248893-2249387 bp CRISPR array Location: 2249472-2251083 bp Num of repeats: 25 Spacers: s44-s67 CRISPR array Location: 2249472-2251083 bp Num of repeats: 25 Spacers: s44-s67 Gene: cd09641:cas3HD Type: Type-I Location: 2251273-2253831 bp Gene: cd09693:cas5 Type: Type-I Location: 2253855-2254595 bp Gene: pfam05107:cas7b Type: Type-I Location: 2254597-2255586 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 2255579-2257318 bp Gene: cd09652:cas6 Type: other Location: 2257330-2258025 bp Gene: cd06127:DEDDh Type: Type-I Location: 2548657-2549163 bp Gene: unk Type: unknown Location: 2549322-2549990 bp Gene: unk Type: unknown Location: 2550403-2550909 bp Gene: cd06127:DEDDh Type: Type-I Location: 2551273-2552310 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2559125-2559610 bp Gene: cd09641:cas3HD Type: Type-I Location: 2604592-2607000 bp Gene: cd09693:cas5 Type: Type-I Location: 2607027-2607824 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2607840-2608853 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2608872-2610338 bp Gene: pfam01881:cas6 Type: other Location: 2610343-2611080 bp Gene: unk Type: unknown Location: 2611181-2611357 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2611810-2612919 bp CRISPR array Location: 3178986-3179277 bp Num of repeats: 5 Spacers: s68-s71 CRISPR array Location: 3178986-3179277 bp Num of repeats: 5 Spacers: s68-s71 CRISPR array Location: 3238192-3239791 bp Num of repeats: 25 Spacers: s72-s95 CRISPR array Location: 3238192-3239791 bp Num of repeats: 25 Spacers: s72-s95 Gene: cd09725:cas2 Type: universal Location: 3239975-3240241 bp Gene: cd09722:cas1 Type: universal Location: 3240244-3241224 bp Gene: pfam01930:cas4 Type: Type-I Location: 3241227-3241745 bp Gene: COG1203:cas3 Type: Type-I Location: 3241793-3244114 bp Gene: cd09693:cas5 Type: Type-I Location: 3244125-3244826 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3244828-3245742 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3245744-3247594 bp Gene: pfam01881:cas6 Type: other Location: 3247600-3248337 bp Gene: pfam13280:WYL Type: other Location: 3248415-3249368 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1730818-1731898 bp]: array | spacers
           [Locus range 2043647-2044666 bp]: array | spacers
           [Locus range 2062732-2062892 bp]: array | spacers
           [Locus range 2138773-2139456 bp]: array | spacers
           [Locus range 2249472-2251083 bp]: array | spacers
           [Locus range 3178986-3179277 bp]: array | spacers
           [Locus range 3238192-3239791 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)