CRISPRone

CRISPRone report for GCA_015732555.1_ASM1573255v1

♦ Seq 1: CP029423.1 Clostridioides difficile R20291 chromosome, complete genome

⇒Summary: seq-len = 4204902 bp; # of CRISPR array = 10; # of cas gene = 24  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1305910-1306868 bp 2 Locus 2: 1515256-1515943 bp 3 Locus 3: 1591890-1595903 bp 4 Locus 4: 1626627-1626921 bp 5 Locus 5: 1719304-1721815 bp 6 Locus 6: 1859093-1859917 bp 7 Locus 7: 2252648-2252742 bp 8 Locus 8: 2294363-2294988 bp 9 Locus 9: 2755238-2763113 bp 10 Locus 10: 3338720-3349902 bp 11 Locus 11: 3585725-3592257 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x5 Zoom in on locus 5 x6 x5 Zoom in on locus 6 x13 Zoom in on locus 7 x2 Zoom in on locus 8 x10 Zoom in on locus 9 Zoom in on locus 10 x25 Zoom in on locus 11 x10 CRISPR array Location: 1305910-1306868 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1305910-1306868 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1515256-1515943 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 1515256-1515943 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1591890-1592489 bp Gene: unk Type: unknown Location: 1592657-1593124 bp Gene: COG2378:WYL Type: other Location: 1593229-1594146 bp Gene: cas14:cas14 Type: Type-V Location: 1594785-1595903 bp CRISPR array Location: 1626627-1626921 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1626627-1626921 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1719304-1719661 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1719304-1719661 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1721525-1721815 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1721525-1721815 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1859093-1859917 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 1859093-1859917 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 2252648-2252742 bp Num of repeats: 2 Spacers: s50-s50 CRISPR array Location: 2252648-2252742 bp Num of repeats: 2 Spacers: s50-s50 CRISPR array Location: 2294363-2294988 bp Num of repeats: 10 Spacers: s51-s59 CRISPR array Location: 2294363-2294988 bp Num of repeats: 10 Spacers: s51-s59 Gene: cd09641:cas3HD Type: Type-I Location: 2755238-2757646 bp Gene: cd09693:cas5 Type: Type-I Location: 2757673-2758479 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2758495-2759508 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2759528-2761003 bp Gene: pfam01881:cas6 Type: other Location: 2761008-2761745 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2762004-2763113 bp CRISPR array Location: 3338720-3340337 bp Num of repeats: 25 Spacers: s60-s83 CRISPR array Location: 3338720-3340337 bp Num of repeats: 25 Spacers: s60-s83 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 3339566-3339799 bp Gene: unk Type: unknown Location: 3340021-3340188 bp Gene: cd09725:cas2 Type: universal Location: 3340521-3340787 bp Gene: cd09722:cas1 Type: universal Location: 3340790-3341770 bp Gene: pfam01930:cas4 Type: Type-I Location: 3341773-3342291 bp Gene: COG1203:cas3 Type: Type-I Location: 3342339-3344660 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3344671-3345372 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3345374-3346288 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3346290-3348167 bp Gene: pfam01881:cas6 Type: other Location: 3348173-3348967 bp Gene: pfam13280:WYL Type: other Location: 3348988-3349902 bp CRISPR array Location: 3585725-3586347 bp Num of repeats: 10 Spacers: s84-s92 CRISPR array Location: 3585725-3586347 bp Num of repeats: 10 Spacers: s84-s92 Gene: COG1203:cas3 Type: Type-I Location: 3586600-3588585 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3588596-3589666 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 3589687-3590853 bp Gene: pfam01881:cas6 Type: other Location: 3590855-3591619 bp Gene: cd09693:cas5 Type: Type-I Location: 3591610-3592257 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1305910-1306868 bp]: array | spacers
           [Locus range 1515256-1515943 bp]: array | spacers
           [Locus range 1626627-1626921 bp]: array | spacers
           [Locus range 1719304-1719661 bp]: array | spacers
           [Locus range 1721525-1721815 bp]: array | spacers
           [Locus range 1859093-1859917 bp]: array | spacers
           [Locus range 2252648-2252742 bp]: array | spacers
           [Locus range 2294363-2294988 bp]: array | spacers
           [Locus range 3338720-3340337 bp]: array | spacers
           [Locus range 3585725-3586347 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)