CRISPRone

CRISPRone report for GCA_016054795.1_ASM1605479v1

♦ Seq 1: JAECSD010000047.1 Pseudomonas aeruginosa strain CCBH28865 47, whole genome shotgun sequence

⇒Summary: seq-len = 47204 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 216-11794 bp Zoom in on locus 1 x28 x23 CRISPR array Location: 216-1865 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 216-1865 bp Num of repeats: 28 Spacers: s1-s27 Gene: cd09718:cas1 Type: universal Location: 2126-3100 bp Gene: COG1203:cas3 Type: Type-I Location: 3097-6327 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6385-7689 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7676-8659 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8670-9698 bp Gene: cd09739:cas6f Type: other Location: 9702-10265 bp CRISPR array Location: 10450-11794 bp Num of repeats: 23 Spacers: s28-s49 CRISPR array Location: 10450-11794 bp Num of repeats: 23 Spacers: s28-s49 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 216-1865 bp]: array | spacers
           [Locus range 10450-11794 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JAECSD010000025.1 Pseudomonas aeruginosa strain CCBH28865 25, whole genome shotgun sequence

⇒Summary: seq-len = 76388 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13559-21820 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 13559-15925 bp Gene: unk Type: unknown Location: 16318-16965 bp Gene: unk Type: unknown Location: 17031-17399 bp Gene: COG2378:WYL Type: other Location: 17449-18291 bp Gene: pfam13280:WYL Type: other Location: 19033-20049 bp Gene: mkCas0115:csx3 Type: other Location: 20210-21820 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JAECSD010000117.1 Pseudomonas aeruginosa strain CCBH28865 117, whole genome shotgun sequence

⇒Summary: seq-len = 8094 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6950-7877 bp Zoom in on locus 1 x16 CRISPR array Location: 6950-7877 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 6950-7877 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6950-7877 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)