CRISPRone

CRISPRone report for GCA_016054815.1_ASM1605481v1

♦ Seq 1: JAECSF010000030.1 Pseudomonas aeruginosa strain CCBH28717 30, whole genome shotgun sequence

⇒Summary: seq-len = 76389 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54570-62831 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 54570-56180 bp Gene: pfam13280:WYL Type: other Location: 56341-57357 bp Gene: COG2378:WYL Type: other Location: 58099-58941 bp Gene: unk Type: unknown Location: 58991-59359 bp Gene: unk Type: unknown Location: 59425-60072 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 60465-62831 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JAECSF010000073.1 Pseudomonas aeruginosa strain CCBH28717 73, whole genome shotgun sequence

⇒Summary: seq-len = 17640 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7797-17465 bp Zoom in on locus 1 x23 CRISPR array Location: 7797-9142 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 7797-9142 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09739:cas6f Type: other Location: 9326-9889 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9893-10921 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 10932-11915 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 11902-13206 bp Gene: COG1203:cas3 Type: Type-I Location: 13264-16494 bp Gene: cd09718:cas1 Type: universal Location: 16491-17465 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7797-9142 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JAECSF010000035.1 Pseudomonas aeruginosa strain CCBH28717 35, whole genome shotgun sequence

⇒Summary: seq-len = 63378 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62234-63161 bp Zoom in on locus 1 x16 CRISPR array Location: 62234-63161 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 62234-63161 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62234-63161 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JAECSF010000119.1 Pseudomonas aeruginosa strain CCBH28717 119, whole genome shotgun sequence

⇒Summary: seq-len = 1878 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 216-1865 bp Zoom in on locus 1 x28 CRISPR array Location: 216-1865 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 216-1865 bp Num of repeats: 28 Spacers: s1-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 216-1865 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)