CRISPRone

CRISPRone report for GCA_016054915.1_ASM1605491v1

♦ Seq 1: JAECSH010000035.1 Pseudomonas aeruginosa strain CCBH28242 35, whole genome shotgun sequence

⇒Summary: seq-len = 63300 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62156-63083 bp Zoom in on locus 1 x16 CRISPR array Location: 62156-63083 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 62156-63083 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62156-63083 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JAECSH010000026.1 Pseudomonas aeruginosa strain CCBH28242 26, whole genome shotgun sequence

⇒Summary: seq-len = 76388 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13559-21820 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 13559-15925 bp Gene: unk Type: unknown Location: 16318-16965 bp Gene: unk Type: unknown Location: 17031-17399 bp Gene: COG2378:WYL Type: other Location: 17449-18291 bp Gene: pfam13280:WYL Type: other Location: 19033-20049 bp Gene: mkCas0115:csx3 Type: other Location: 20210-21820 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JAECSH010000164.1 Pseudomonas aeruginosa strain CCBH28242 164, whole genome shotgun sequence

⇒Summary: seq-len = 1889 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26-1674 bp Zoom in on locus 1 x28 CRISPR array Location: 26-1674 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 26-1674 bp Num of repeats: 28 Spacers: s1-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 26-1674 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JAECSH010000050.1 Pseudomonas aeruginosa strain CCBH28242 50, whole genome shotgun sequence

⇒Summary: seq-len = 45411 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98-9766 bp Zoom in on locus 1 x23 Gene: cd09718:cas1 Type: universal Location: 98-1072 bp Gene: COG1203:cas3 Type: Type-I Location: 1069-4299 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4357-5661 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 5648-6631 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 6642-7670 bp Gene: cd09739:cas6f Type: other Location: 7674-8237 bp CRISPR array Location: 8422-9766 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 8422-9766 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8422-9766 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)