CRISPRone

CRISPRone report for GCA_016055245.1_ASM1605524v1

♦ Seq 1: JAECSQ010000304.1 Pseudomonas aeruginosa strain CCBH27919 NODE_303_length_4901_cov_11.630623, whole genome shotgun sequence

⇒Summary: seq-len = 4901 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110-1038 bp Zoom in on locus 1 x16 CRISPR array Location: 110-1038 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 110-1038 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110-1038 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JAECSQ010000529.1 Pseudomonas aeruginosa strain CCBH27919 NODE_530_length_523_cov_14.423077, whole genome shotgun sequence

⇒Summary: seq-len = 523 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27-414 bp Zoom in on locus 1 x7 CRISPR array Location: 27-414 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 27-414 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 27-414 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JAECSQ010000020.1 Pseudomonas aeruginosa strain CCBH27919 NODE_20_length_57270_cov_13.432551, whole genome shotgun sequence

⇒Summary: seq-len = 57270 bp; # of CRISPR array = 0; # of cas gene = 5  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6027-11499 bp Zoom in on locus 1 Gene: cd09708:DinG Type: Subtype-IV-A Location: 6027-8201 bp Gene: mkCas0159:csf5gr6 Type: Subtype-IV-A Location: 8290-9015 bp Gene: cd09705:csf1gr8 Type: Subtype-IV-A Location: 9044-9799 bp Gene: cd09706:csf2gr7 Type: Subtype-IV-A Location: 9799-10842 bp Gene: cd09707:csf3gr5 Type: Subtype-IV-A Location: 10849-11499 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JAECSQ010000477.1 Pseudomonas aeruginosa strain CCBH27919 NODE_478_length_801_cov_17.855228, whole genome shotgun sequence

⇒Summary: seq-len = 801 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28-776 bp Zoom in on locus 1 x13 CRISPR array Location: 28-776 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 28-776 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28-776 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JAECSQ010000009.1 Pseudomonas aeruginosa strain CCBH27919 NODE_9_length_72954_cov_15.079782, whole genome shotgun sequence

⇒Summary: seq-len = 72954 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13614-21875 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 13614-15980 bp Gene: unk Type: unknown Location: 16373-17020 bp Gene: unk Type: unknown Location: 17086-17454 bp Gene: COG2378:WYL Type: other Location: 17504-18346 bp Gene: pfam13280:WYL Type: other Location: 19088-20104 bp Gene: mkCas0115:csx3 Type: other Location: 20265-21875 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JAECSQ010000166.1 Pseudomonas aeruginosa strain CCBH27919 NODE_165_length_13621_cov_9.632758, whole genome shotgun sequence

⇒Summary: seq-len = 13621 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 140-9808 bp Zoom in on locus 1 x23 Gene: cd09718:cas1 Type: universal Location: 140-1114 bp Gene: COG1203:cas3 Type: Type-I Location: 1111-4341 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4399-5703 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 5690-6673 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 6684-7712 bp Gene: cd09739:cas6f Type: other Location: 7716-8279 bp CRISPR array Location: 8464-9808 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 8464-9808 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8464-9808 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)