CRISPRone

CRISPRone report for GCA_016055385.1_ASM1605538v1

♦ Seq 1: JAECSX010000047.1 Pseudomonas aeruginosa strain CCBH27678 NODE_47_length_46635_cov_7.368689, whole genome shotgun sequence

⇒Summary: seq-len = 46635 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34045-46503 bp Zoom in on locus 1 x34 x2 x29 CRISPR array Location: 34045-36052 bp Num of repeats: 34 Spacers: s1-s33 CRISPR array Location: 34045-36052 bp Num of repeats: 34 Spacers: s1-s33 Gene: cd09739:cas6f Type: other Location: 36235-36798 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 36802-37830 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 37841-38824 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 38811-40115 bp Gene: COG1203:cas3 Type: Type-I Location: 40173-43403 bp Gene: cd09718:cas1 Type: universal Location: 43400-44374 bp CRISPR array Location: 44635-44722 bp Num of repeats: 2 Spacers: s34-s34 CRISPR array Location: 44635-44722 bp Num of repeats: 2 Spacers: s34-s34 CRISPR array Location: 44795-46503 bp Num of repeats: 29 Spacers: s35-s62 CRISPR array Location: 44795-46503 bp Num of repeats: 29 Spacers: s35-s62 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 34045-36052 bp]: array | spacers
           [Locus range 44635-44722 bp]: array | spacers
           [Locus range 44795-46503 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JAECSX010000024.1 Pseudomonas aeruginosa strain CCBH27678 NODE_24_length_92836_cov_9.791660, whole genome shotgun sequence

⇒Summary: seq-len = 92836 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90882-92289 bp Zoom in on locus 1 x24 CRISPR array Location: 90882-92289 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 90882-92289 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90882-92289 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)