CRISPRone

CRISPRone report for GCA_016055545.1_ASM1605554v1

♦ Seq 1: JAECTE010000091.1 Pseudomonas aeruginosa strain CCBH27615 NODE_91_length_9079_cov_7.866622, whole genome shotgun sequence

⇒Summary: seq-len = 9079 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7934-9042 bp Zoom in on locus 1 x19 CRISPR array Location: 7934-9042 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 7934-9042 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7934-9042 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JAECTE010000033.1 Pseudomonas aeruginosa strain CCBH27615 NODE_33_length_68984_cov_8.937072, whole genome shotgun sequence

⇒Summary: seq-len = 68984 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-9591 bp Zoom in on locus 1 x3 x15 CRISPR array Location: 2-150 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2-150 bp Num of repeats: 3 Spacers: s1-s2 Gene: cd09718:cas1 Type: universal Location: 401-1375 bp Gene: COG1203:cas3 Type: Type-I Location: 1372-4602 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4660-5964 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 5951-6934 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 6945-7973 bp Gene: cd09739:cas6f Type: other Location: 7977-8540 bp CRISPR array Location: 8724-9591 bp Num of repeats: 15 Spacers: s3-s16 CRISPR array Location: 8724-9591 bp Num of repeats: 15 Spacers: s3-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2-150 bp]: array | spacers
           [Locus range 8724-9591 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)