CRISPRone

CRISPRone report for GCA_016055775.1_ASM1605577v1

♦ Seq 1: JAECTR010000029.1 Pseudomonas aeruginosa strain CCBH27346 NODE_29_length_75560_cov_21.128869, whole genome shotgun sequence

⇒Summary: seq-len = 75560 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 133-12591 bp Zoom in on locus 1 x29 x2 x34 CRISPR array Location: 133-1842 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 133-1842 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 1914-2002 bp Num of repeats: 2 Spacers: s29-s29 CRISPR array Location: 1914-2002 bp Num of repeats: 2 Spacers: s29-s29 Gene: cd09718:cas1 Type: universal Location: 2262-3236 bp Gene: COG1203:cas3 Type: Type-I Location: 3233-6463 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6521-7825 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7812-8795 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8806-9834 bp Gene: cd09739:cas6f Type: other Location: 9838-10401 bp CRISPR array Location: 10585-12591 bp Num of repeats: 34 Spacers: s30-s62 CRISPR array Location: 10585-12591 bp Num of repeats: 34 Spacers: s30-s62 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 133-1842 bp]: array | spacers
           [Locus range 1914-2002 bp]: array | spacers
           [Locus range 10585-12591 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JAECTR010000028.1 Pseudomonas aeruginosa strain CCBH27346 NODE_28_length_84094_cov_23.866507, whole genome shotgun sequence

⇒Summary: seq-len = 84094 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 82140-83547 bp Zoom in on locus 1 x24 CRISPR array Location: 82140-83547 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 82140-83547 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 82140-83547 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)