CRISPRone

CRISPRone report for GCA_016056035.1_ASM1605603v1

♦ Seq 1: JAECUE010000022.1 Pseudomonas aeruginosa strain CCBH26731 NODE_22_length_127225_cov_21.402540, whole genome shotgun sequence

⇒Summary: seq-len = 127225 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62255-63182 bp Zoom in on locus 1 x16 CRISPR array Location: 62255-63182 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 62255-63182 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62255-63182 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JAECUE010000013.1 Pseudomonas aeruginosa strain CCBH26731 NODE_13_length_173224_cov_16.471025, whole genome shotgun sequence

⇒Summary: seq-len = 173224 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38224-49802 bp Zoom in on locus 1 x23 x28 CRISPR array Location: 38224-39569 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 38224-39569 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09739:cas6f Type: other Location: 39753-40316 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40320-41348 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41359-42342 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42329-43633 bp Gene: COG1203:cas3 Type: Type-I Location: 43691-46921 bp Gene: cd09718:cas1 Type: universal Location: 46918-47892 bp CRISPR array Location: 48154-49802 bp Num of repeats: 28 Spacers: s23-s49 CRISPR array Location: 48154-49802 bp Num of repeats: 28 Spacers: s23-s49 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38224-39569 bp]: array | spacers
           [Locus range 48154-49802 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JAECUE010000057.1 Pseudomonas aeruginosa strain CCBH26731 NODE_57_length_29643_cov_66.946504, whole genome shotgun sequence

⇒Summary: seq-len = 29643 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7697-12068 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 7697-9409 bp Gene: pfam13280:WYL Type: other Location: 9468-10484 bp Gene: unk Type: unknown Location: 10727-10948 bp Gene: COG2378:WYL Type: other Location: 11226-12068 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JAECUE010000035.1 Pseudomonas aeruginosa strain CCBH26731 NODE_35_length_84044_cov_21.837816, whole genome shotgun sequence

⇒Summary: seq-len = 84044 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15360-22148 bp Zoom in on locus 1 Gene: cd09696:cas3 Type: Subtype-I-U Location: 15360-18581 bp Gene: pfam13280:WYL Type: other Location: 18594-19502 bp Gene: unk Type: unknown Location: 19782-20672 bp Gene: unk Type: unknown Location: 20807-21124 bp Gene: mkCas0115:csx3 Type: other Location: 21117-22148 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)