CRISPRone

CRISPRone report for GCA_016093595.1_ASM1609359v1

♦ Seq 1: VBZD01000007.1 Clostridioides difficile strain GV1152 2565_S86_L001_R1_001__paired__contig_7, whole genome shotgun sequence

⇒Summary: seq-len = 305977 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 301966-302980 bp Zoom in on locus 1 x16 CRISPR array Location: 301966-302980 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 301966-302980 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 301966-302980 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VBZD01000005.1 Clostridioides difficile strain GV1152 2565_S86_L001_R1_001__paired__contig_5, whole genome shotgun sequence

⇒Summary: seq-len = 212967 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54044-55451 bp 2 Locus 2: 106342-106502 bp Zoom in on locus 1 x22 Zoom in on locus 2 x3 CRISPR array Location: 54044-55451 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 54044-55451 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 106342-106502 bp Num of repeats: 3 Spacers: s22-s23 CRISPR array Location: 106342-106502 bp Num of repeats: 3 Spacers: s22-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 54044-55451 bp]: array | spacers
           [Locus range 106342-106502 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VBZD01000016.1 Clostridioides difficile strain GV1152 2565_S86_L001_R1_001__paired__contig_16, whole genome shotgun sequence

⇒Summary: seq-len = 133031 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19291-20381 bp Zoom in on locus 1 x17 CRISPR array Location: 19291-20381 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 19291-20381 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19291-20381 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VBZD01000018.1 Clostridioides difficile strain GV1152 2565_S86_L001_R1_001__paired__contig_18, whole genome shotgun sequence

⇒Summary: seq-len = 474264 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 253769-265003 bp Zoom in on locus 1 x26 CRISPR array Location: 253769-255438 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 253769-255438 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 255622-255888 bp Gene: cd09722:cas1 Type: universal Location: 255891-256871 bp Gene: pfam01930:cas4 Type: Type-I Location: 256874-257392 bp Gene: COG1203:cas3 Type: Type-I Location: 257440-259761 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 259772-260473 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 260475-261389 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 261391-263268 bp Gene: pfam01881:cas6 Type: other Location: 263274-264068 bp Gene: pfam13280:WYL Type: other Location: 264089-265003 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 253769-255438 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VBZD01000009.1 Clostridioides difficile strain GV1152 2565_S86_L001_R1_001__paired__contig_9, whole genome shotgun sequence

⇒Summary: seq-len = 490419 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91204-91762 bp 2 Locus 2: 299877-300235 bp Zoom in on locus 1 x9 Zoom in on locus 2 x6 CRISPR array Location: 91204-91762 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 91204-91762 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 299877-300235 bp Num of repeats: 6 Spacers: s9-s13 CRISPR array Location: 299877-300235 bp Num of repeats: 6 Spacers: s9-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91204-91762 bp]: array | spacers
           [Locus range 299877-300235 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: VBZD01000003.1 Clostridioides difficile strain GV1152 2565_S86_L001_R1_001__paired__contig_3, whole genome shotgun sequence

⇒Summary: seq-len = 485105 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244545-245103 bp 2 Locus 2: 318370-326235 bp Zoom in on locus 1 x9 Zoom in on locus 2 CRISPR array Location: 244545-245103 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 244545-245103 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318370-319479 bp Gene: pfam01881:cas6 Type: other Location: 319737-320474 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320479-321954 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 321974-322987 bp Gene: cd09693:cas5 Type: Type-I Location: 323003-323800 bp Gene: cd09641:cas3HD Type: Type-I Location: 323827-326235 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244545-245103 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: VBZD01000001.1 Clostridioides difficile strain GV1152 2565_S86_L001_R1_001__paired__contig_1, whole genome shotgun sequence

⇒Summary: seq-len = 250883 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 211393-212608 bp Zoom in on locus 1 x19 CRISPR array Location: 211393-212608 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 211393-212608 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 211393-212608 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)