CRISPRone

CRISPRone report for GCA_016093615.1_ASM1609361v1

♦ Seq 1: VBZH01000009.1 Clostridioides difficile strain GV1006 2162_S79_L001_R1_001__paired__contig_9, whole genome shotgun sequence

⇒Summary: seq-len = 90855 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17970-18993 bp Zoom in on locus 1 x16 CRISPR array Location: 17970-18993 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 17970-18993 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17970-18993 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VBZH01000004.1 Clostridioides difficile strain GV1006 2162_S79_L001_R1_001__paired__contig_4, whole genome shotgun sequence

⇒Summary: seq-len = 83051 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6091-13956 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 6091-8499 bp Gene: cd09693:cas5 Type: Type-I Location: 8526-9323 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 9339-10352 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 10372-11847 bp Gene: pfam01881:cas6 Type: other Location: 11852-12589 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 12847-13956 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VBZH01000047.1 Clostridioides difficile strain GV1006 2162_S79_L001_R1_001__paired__contig_47, whole genome shotgun sequence

⇒Summary: seq-len = 38633 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-358 bp Zoom in on locus 1 x6 CRISPR array Location: 1-358 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1-358 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-358 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VBZH01000105.1 Clostridioides difficile strain GV1006 2162_S79_L001_R1_001__paired__contig_106, whole genome shotgun sequence

⇒Summary: seq-len = 8192 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4-8191 bp Zoom in on locus 1 x16 CRISPR array Location: 4-1018 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 4-1018 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09725:cas2 Type: universal Location: 1202-1468 bp Gene: cd09722:cas1 Type: universal Location: 1471-2451 bp Gene: pfam01930:cas4 Type: Type-I Location: 2454-2972 bp Gene: COG1203:cas3 Type: Type-I Location: 3020-5341 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 5352-6053 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 6055-6969 bp Gene: cd09754:cas8b2 Type: Subtype-I-B Location: 6971-8191 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 4-1018 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VBZH01000006.1 Clostridioides difficile strain GV1006 2162_S79_L001_R1_001__paired__contig_6, whole genome shotgun sequence

⇒Summary: seq-len = 4272 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 180-1194 bp Zoom in on locus 1 x16 CRISPR array Location: 180-1194 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 180-1194 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 180-1194 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: VBZH01000069.1 Clostridioides difficile strain GV1006 2162_S79_L001_R1_001__paired__contig_69, whole genome shotgun sequence

⇒Summary: seq-len = 24451 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19795-20353 bp Zoom in on locus 1 x9 CRISPR array Location: 19795-20353 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 19795-20353 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19795-20353 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: VBZH01000111.1 Clostridioides difficile strain GV1006 2162_S79_L001_R1_001__paired__contig_113, whole genome shotgun sequence

⇒Summary: seq-len = 202 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-216 bp Zoom in on locus 1 x4 CRISPR array Location: 0-216 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 0-216 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-216 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: VBZH01000007.1 Clostridioides difficile strain GV1006 2162_S79_L001_R1_001__paired__contig_7, whole genome shotgun sequence

⇒Summary: seq-len = 81765 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2823-2982 bp 2 Locus 2: 53874-55280 bp Zoom in on locus 1 x3 Zoom in on locus 2 x22 CRISPR array Location: 2823-2982 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2823-2982 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 53874-55280 bp Num of repeats: 22 Spacers: s3-s23 CRISPR array Location: 53874-55280 bp Num of repeats: 22 Spacers: s3-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2823-2982 bp]: array | spacers
           [Locus range 53874-55280 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: VBZH01000072.1 Clostridioides difficile strain GV1006 2162_S79_L001_R1_001__paired__contig_72, whole genome shotgun sequence

⇒Summary: seq-len = 93147 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11-236 bp Zoom in on locus 1 x4 CRISPR array Location: 11-236 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 11-236 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11-236 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: VBZH01000219.1 Clostridioides difficile strain GV1006 2162_S79_L001_R1_001__paired__contig_228, whole genome shotgun sequence

⇒Summary: seq-len = 390 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-227 bp Zoom in on locus 1 x4 CRISPR array Location: 2-227 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 2-227 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2-227 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)