CRISPRone

CRISPRone report for GCA_016093755.1_ASM1609375v1

♦ Seq 1: VBZM01000032.1 Clostridioides difficile strain GV973 2009_S71_L001_R1_001__paired__contig_32, whole genome shotgun sequence

⇒Summary: seq-len = 105846 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 75456-83321 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 75456-77864 bp Gene: cd09693:cas5 Type: Type-I Location: 77891-78688 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 78704-79717 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 79737-81212 bp Gene: pfam01881:cas6 Type: other Location: 81217-81954 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 82212-83321 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VBZM01000073.1 Clostridioides difficile strain GV973 2009_S71_L001_R1_001__paired__contig_73, whole genome shotgun sequence

⇒Summary: seq-len = 18423 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17935-18425 bp Zoom in on locus 1 x8 CRISPR array Location: 17935-18425 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 17935-18425 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17935-18425 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VBZM01000026.1 Clostridioides difficile strain GV973 2009_S71_L001_R1_001__paired__contig_26, whole genome shotgun sequence

⇒Summary: seq-len = 170624 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 108802-108961 bp 2 Locus 2: 159874-161280 bp Zoom in on locus 1 x3 Zoom in on locus 2 x22 CRISPR array Location: 108802-108961 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 108802-108961 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 159874-161280 bp Num of repeats: 22 Spacers: s3-s23 CRISPR array Location: 159874-161280 bp Num of repeats: 22 Spacers: s3-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 108802-108961 bp]: array | spacers
           [Locus range 159874-161280 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VBZM01000059.1 Clostridioides difficile strain GV973 2009_S71_L001_R1_001__paired__contig_59, whole genome shotgun sequence

⇒Summary: seq-len = 24608 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14916-24615 bp Zoom in on locus 1 x3 Gene: pfam13280:WYL Type: other Location: 14916-15803 bp Gene: pfam01881:cas6 Type: other Location: 15881-16618 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 16624-18501 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 18503-19417 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 19419-20120 bp Gene: COG1203:cas3 Type: Type-I Location: 20131-22452 bp Gene: pfam01930:cas4 Type: Type-I Location: 22467-23018 bp Gene: cd09722:cas1 Type: universal Location: 23021-24001 bp Gene: cd09725:cas2 Type: universal Location: 24004-24270 bp CRISPR array Location: 24454-24615 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 24454-24615 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 24454-24615 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VBZM01000072.1 Clostridioides difficile strain GV973 2009_S71_L001_R1_001__paired__contig_72, whole genome shotgun sequence

⇒Summary: seq-len = 4345 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-213 bp Zoom in on locus 1 x4 CRISPR array Location: 0-213 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 0-213 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-213 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: VBZM01000030.1 Clostridioides difficile strain GV973 2009_S71_L001_R1_001__paired__contig_30, whole genome shotgun sequence

⇒Summary: seq-len = 180643 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 50747-51304 bp Zoom in on locus 1 x9 CRISPR array Location: 50747-51304 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 50747-51304 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 50747-51304 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: VBZM01000029.1 Clostridioides difficile strain GV973 2009_S71_L001_R1_001__paired__contig_29, whole genome shotgun sequence

⇒Summary: seq-len = 80513 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1142 bp Zoom in on locus 1 x18 CRISPR array Location: 0-1142 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 0-1142 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1142 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: VBZM01000046.1 Clostridioides difficile strain GV973 2009_S71_L001_R1_001__paired__contig_46, whole genome shotgun sequence

⇒Summary: seq-len = 4811 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-79 bp Zoom in on locus 1 x2 CRISPR array Location: 0-79 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 0-79 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-79 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: VBZM01000074.1 Clostridioides difficile strain GV973 2009_S71_L001_R1_001__paired__contig_74, whole genome shotgun sequence

⇒Summary: seq-len = 4156 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2963-3978 bp Zoom in on locus 1 x16 CRISPR array Location: 2963-3978 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 2963-3978 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2963-3978 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: VBZM01000043.1 Clostridioides difficile strain GV973 2009_S71_L001_R1_001__paired__contig_43, whole genome shotgun sequence

⇒Summary: seq-len = 35863 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28573-28732 bp Zoom in on locus 1 x3 CRISPR array Location: 28573-28732 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 28573-28732 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28573-28732 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: VBZM01000025.1 Clostridioides difficile strain GV973 2009_S71_L001_R1_001__paired__contig_25, whole genome shotgun sequence

⇒Summary: seq-len = 28862 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9574-10663 bp Zoom in on locus 1 x17 CRISPR array Location: 9574-10663 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 9574-10663 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9574-10663 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)