CRISPRone

CRISPRone report for GCA_016093775.1_ASM1609377v1

♦ Seq 1: VBZP01000007.1 Clostridioides difficile strain GV840 1658_S59_L001_R1_001__paired__contig_7, whole genome shotgun sequence

⇒Summary: seq-len = 269431 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 149308-149666 bp Zoom in on locus 1 x6 CRISPR array Location: 149308-149666 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 149308-149666 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 149308-149666 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VBZP01000008.1 Clostridioides difficile strain GV840 1658_S59_L001_R1_001__paired__contig_8, whole genome shotgun sequence

⇒Summary: seq-len = 340634 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78440-89675 bp Zoom in on locus 1 x26 CRISPR array Location: 78440-80110 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 78440-80110 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 80294-80560 bp Gene: cd09722:cas1 Type: universal Location: 80563-81543 bp Gene: pfam01930:cas4 Type: Type-I Location: 81546-82064 bp Gene: COG1203:cas3 Type: Type-I Location: 82112-84433 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 84444-85145 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 85147-86061 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 86063-87940 bp Gene: pfam01881:cas6 Type: other Location: 87946-88740 bp Gene: pfam13280:WYL Type: other Location: 88761-89675 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 78440-80110 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VBZP01000010.1 Clostridioides difficile strain GV840 1658_S59_L001_R1_001__paired__contig_10, whole genome shotgun sequence

⇒Summary: seq-len = 719776 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 230550-231564 bp 2 Locus 2: 393542-401407 bp 3 Locus 3: 474675-475232 bp Zoom in on locus 1 x16 Zoom in on locus 2 Zoom in on locus 3 x9 CRISPR array Location: 230550-231564 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 230550-231564 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09641:cas3HD Type: Type-I Location: 393542-395950 bp Gene: cd09693:cas5 Type: Type-I Location: 395977-396774 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 396790-397803 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 397823-399298 bp Gene: pfam01881:cas6 Type: other Location: 399303-400040 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 400298-401407 bp CRISPR array Location: 474675-475232 bp Num of repeats: 9 Spacers: s16-s23 CRISPR array Location: 474675-475232 bp Num of repeats: 9 Spacers: s16-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 230550-231564 bp]: array | spacers
           [Locus range 474675-475232 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VBZP01000018.1 Clostridioides difficile strain GV840 1658_S59_L001_R1_001__paired__contig_18, whole genome shotgun sequence

⇒Summary: seq-len = 162984 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 103690-103984 bp Zoom in on locus 1 x5 CRISPR array Location: 103690-103984 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 103690-103984 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 103690-103984 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VBZP01000017.1 Clostridioides difficile strain GV840 1658_S59_L001_R1_001__paired__contig_17, whole genome shotgun sequence

⇒Summary: seq-len = 100159 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-615 bp Zoom in on locus 1 x10 CRISPR array Location: 0-615 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 0-615 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-615 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: VBZP01000025.1 Clostridioides difficile strain GV840 1658_S59_L001_R1_001__paired__contig_25, whole genome shotgun sequence

⇒Summary: seq-len = 57425 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38276-39492 bp Zoom in on locus 1 x19 CRISPR array Location: 38276-39492 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 38276-39492 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38276-39492 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: VBZP01000006.1 Clostridioides difficile strain GV840 1658_S59_L001_R1_001__paired__contig_6, whole genome shotgun sequence

⇒Summary: seq-len = 172689 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 118568-119909 bp 2 Locus 2: 170800-170960 bp Zoom in on locus 1 x21 Zoom in on locus 2 x3 CRISPR array Location: 118568-119909 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 118568-119909 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 170800-170960 bp Num of repeats: 3 Spacers: s21-s22 CRISPR array Location: 170800-170960 bp Num of repeats: 3 Spacers: s21-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 118568-119909 bp]: array | spacers
           [Locus range 170800-170960 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: VBZP01000047.1 Clostridioides difficile strain GV840 1658_S59_L001_R1_001__paired__contig_47, whole genome shotgun sequence

⇒Summary: seq-len = 6921 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 76-302 bp Zoom in on locus 1 x4 CRISPR array Location: 76-302 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 76-302 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 76-302 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)