CRISPRone

CRISPRone report for GCA_016093825.1_ASM1609382v1

♦ Seq 1: VBZO01000007.1 Clostridioides difficile strain GV868 1802_S63_L001_R1_001__paired__contig_7, whole genome shotgun sequence

⇒Summary: seq-len = 208347 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 208183-208343 bp Zoom in on locus 1 x3 CRISPR array Location: 208183-208343 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 208183-208343 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 208183-208343 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VBZO01000010.1 Clostridioides difficile strain GV868 1802_S63_L001_R1_001__paired__contig_10, whole genome shotgun sequence

⇒Summary: seq-len = 25075 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14916-25077 bp Zoom in on locus 1 x10 Gene: pfam13280:WYL Type: other Location: 14916-15803 bp Gene: pfam01881:cas6 Type: other Location: 15881-16618 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 16624-18501 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 18503-19417 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 19419-20120 bp Gene: COG1203:cas3 Type: Type-I Location: 20131-22452 bp Gene: pfam01930:cas4 Type: Type-I Location: 22467-23018 bp Gene: cd09722:cas1 Type: universal Location: 23021-24001 bp Gene: cd09725:cas2 Type: universal Location: 24004-24270 bp CRISPR array Location: 24454-25077 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 24454-25077 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 24454-25077 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VBZO01000005.1 Clostridioides difficile strain GV868 1802_S63_L001_R1_001__paired__contig_5, whole genome shotgun sequence

⇒Summary: seq-len = 45270 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-554 bp Zoom in on locus 1 x9 CRISPR array Location: 1-554 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 1-554 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-554 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VBZO01000002.1 Clostridioides difficile strain GV868 1802_S63_L001_R1_001__paired__contig_2, whole genome shotgun sequence

⇒Summary: seq-len = 727156 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244545-245103 bp 2 Locus 2: 318370-326235 bp 3 Locus 3: 488213-489228 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x16 CRISPR array Location: 244545-245103 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 244545-245103 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318370-319479 bp Gene: pfam01881:cas6 Type: other Location: 319737-320474 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320479-321954 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 321974-322987 bp Gene: cd09693:cas5 Type: Type-I Location: 323003-323800 bp Gene: cd09641:cas3HD Type: Type-I Location: 323827-326235 bp CRISPR array Location: 488213-489228 bp Num of repeats: 16 Spacers: s9-s23 CRISPR array Location: 488213-489228 bp Num of repeats: 16 Spacers: s9-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244545-245103 bp]: array | spacers
           [Locus range 488213-489228 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VBZO01000019.1 Clostridioides difficile strain GV868 1802_S63_L001_R1_001__paired__contig_19, whole genome shotgun sequence

⇒Summary: seq-len = 88404 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-747 bp Zoom in on locus 1 x12 CRISPR array Location: 0-747 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 0-747 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-747 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: VBZO01000024.1 Clostridioides difficile strain GV868 1802_S63_L001_R1_001__paired__contig_24, whole genome shotgun sequence

⇒Summary: seq-len = 153930 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 102039-102198 bp 2 Locus 2: 153090-153906 bp Zoom in on locus 1 x3 Zoom in on locus 2 x13 CRISPR array Location: 102039-102198 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 102039-102198 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 153090-153906 bp Num of repeats: 13 Spacers: s3-s14 CRISPR array Location: 153090-153906 bp Num of repeats: 13 Spacers: s3-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 102039-102198 bp]: array | spacers
           [Locus range 153090-153906 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: VBZO01000055.1 Clostridioides difficile strain GV868 1802_S63_L001_R1_001__paired__contig_55, whole genome shotgun sequence

⇒Summary: seq-len = 332 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-346 bp Zoom in on locus 1 x6 CRISPR array Location: 0-346 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 0-346 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-346 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: VBZO01000003.1 Clostridioides difficile strain GV868 1802_S63_L001_R1_001__paired__contig_3, whole genome shotgun sequence

⇒Summary: seq-len = 126018 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125003-126025 bp Zoom in on locus 1 x16 CRISPR array Location: 125003-126025 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 125003-126025 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 125003-126025 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)