CRISPRone

CRISPRone report for GCA_016093855.1_ASM1609385v1

♦ Seq 1: VBZQ01000002.1 Clostridioides difficile strain GV836 1640_S58_L001_R1_001__paired__contig_2, whole genome shotgun sequence

⇒Summary: seq-len = 218836 bp; # of CRISPR array = 0; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 209289-218643 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 209289-210176 bp Gene: pfam01881:cas6 Type: other Location: 210254-210991 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 210997-212874 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 212876-213790 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 213792-214493 bp Gene: COG1203:cas3 Type: Type-I Location: 214504-216825 bp Gene: pfam01930:cas4 Type: Type-I Location: 216840-217391 bp Gene: cd09722:cas1 Type: universal Location: 217394-218374 bp Gene: cd09725:cas2 Type: universal Location: 218377-218643 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VBZQ01000057.1 Clostridioides difficile strain GV836 1640_S58_L001_R1_001__paired__contig_57, whole genome shotgun sequence

⇒Summary: seq-len = 62914 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62500-62926 bp Zoom in on locus 1 x7 CRISPR array Location: 62500-62926 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 62500-62926 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62500-62926 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VBZQ01000050.1 Clostridioides difficile strain GV836 1640_S58_L001_R1_001__paired__contig_50, whole genome shotgun sequence

⇒Summary: seq-len = 85847 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4701-12566 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 4701-7109 bp Gene: cd09693:cas5 Type: Type-I Location: 7136-7933 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 7949-8962 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 8982-10457 bp Gene: pfam01881:cas6 Type: other Location: 10462-11199 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 11457-12566 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VBZQ01000056.1 Clostridioides difficile strain GV836 1640_S58_L001_R1_001__paired__contig_56, whole genome shotgun sequence

⇒Summary: seq-len = 9951 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9345-9965 bp Zoom in on locus 1 x10 CRISPR array Location: 9345-9965 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 9345-9965 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9345-9965 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VBZQ01000035.1 Clostridioides difficile strain GV836 1640_S58_L001_R1_001__paired__contig_35, whole genome shotgun sequence

⇒Summary: seq-len = 146192 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-145 bp 2 Locus 2: 51036-51196 bp Zoom in on locus 1 x3 Zoom in on locus 2 x3 CRISPR array Location: 0-145 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 0-145 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 51036-51196 bp Num of repeats: 3 Spacers: s3-s4 CRISPR array Location: 51036-51196 bp Num of repeats: 3 Spacers: s3-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-145 bp]: array | spacers
           [Locus range 51036-51196 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: VBZQ01000093.1 Clostridioides difficile strain GV836 1640_S58_L001_R1_001__paired__contig_94, whole genome shotgun sequence

⇒Summary: seq-len = 789 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-611 bp Zoom in on locus 1 x10 CRISPR array Location: 0-611 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 0-611 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-611 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)