CRISPRone

CRISPRone report for GCA_016093915.1_ASM1609391v1

♦ Seq 1: VBZT01000009.1 Clostridioides difficile strain GV753 STO-1531_S12_L001_R1_001__paired__contig_9, whole genome shotgun sequence

⇒Summary: seq-len = 451453 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4851-5865 bp 2 Locus 2: 167816-175681 bp 3 Locus 3: 248949-249506 bp Zoom in on locus 1 x16 Zoom in on locus 2 Zoom in on locus 3 x9 CRISPR array Location: 4851-5865 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 4851-5865 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09641:cas3HD Type: Type-I Location: 167816-170224 bp Gene: cd09693:cas5 Type: Type-I Location: 170251-171048 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 171064-172077 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 172097-173572 bp Gene: pfam01881:cas6 Type: other Location: 173577-174314 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 174572-175681 bp CRISPR array Location: 248949-249506 bp Num of repeats: 9 Spacers: s16-s23 CRISPR array Location: 248949-249506 bp Num of repeats: 9 Spacers: s16-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 4851-5865 bp]: array | spacers
           [Locus range 248949-249506 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VBZT01000006.1 Clostridioides difficile strain GV753 STO-1531_S12_L001_R1_001__paired__contig_6, whole genome shotgun sequence

⇒Summary: seq-len = 444447 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34781-36058 bp 2 Locus 2: 86970-87130 bp 3 Locus 3: 404956-406171 bp Zoom in on locus 1 x20 Zoom in on locus 2 x3 Zoom in on locus 3 x19 CRISPR array Location: 34781-36058 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 34781-36058 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 86970-87130 bp Num of repeats: 3 Spacers: s20-s21 CRISPR array Location: 86970-87130 bp Num of repeats: 3 Spacers: s20-s21 CRISPR array Location: 404956-406171 bp Num of repeats: 19 Spacers: s22-s39 CRISPR array Location: 404956-406171 bp Num of repeats: 19 Spacers: s22-s39 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 34781-36058 bp]: array | spacers
           [Locus range 86970-87130 bp]: array | spacers
           [Locus range 404956-406171 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VBZT01000020.1 Clostridioides difficile strain GV753 STO-1531_S12_L001_R1_001__paired__contig_20, whole genome shotgun sequence

⇒Summary: seq-len = 490130 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190195-190554 bp 2 Locus 2: 398658-398953 bp Zoom in on locus 1 x6 Zoom in on locus 2 x5 CRISPR array Location: 190195-190554 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 190195-190554 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 398658-398953 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 398658-398953 bp Num of repeats: 5 Spacers: s6-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190195-190554 bp]: array | spacers
           [Locus range 398658-398953 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VBZT01000003.1 Clostridioides difficile strain GV753 STO-1531_S12_L001_R1_001__paired__contig_3, whole genome shotgun sequence

⇒Summary: seq-len = 520717 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 255645-266919 bp Zoom in on locus 1 x27 Gene: pfam13280:WYL Type: other Location: 255645-256532 bp Gene: pfam01881:cas6 Type: other Location: 256610-257347 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 257353-259230 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259232-260146 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 260148-260849 bp Gene: COG1203:cas3 Type: Type-I Location: 260860-263181 bp Gene: pfam01930:cas4 Type: Type-I Location: 263196-263747 bp Gene: cd09722:cas1 Type: universal Location: 263750-264730 bp Gene: cd09725:cas2 Type: universal Location: 264733-264999 bp CRISPR array Location: 265183-266919 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 265183-266919 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 265183-266919 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VBZT01000019.1 Clostridioides difficile strain GV753 STO-1531_S12_L001_R1_001__paired__contig_19, whole genome shotgun sequence

⇒Summary: seq-len = 154694 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18275-19365 bp Zoom in on locus 1 x17 CRISPR array Location: 18275-19365 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 18275-19365 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18275-19365 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)