CRISPRone

CRISPRone report for GCA_016093925.1_ASM1609392v1

♦ Seq 1: VBZU01000005.1 Clostridioides difficile strain GV642 1011_S14_L001_R1_001__paired__contig_5, whole genome shotgun sequence

⇒Summary: seq-len = 272898 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44718-46125 bp 2 Locus 2: 97037-97197 bp Zoom in on locus 1 x22 Zoom in on locus 2 x3 CRISPR array Location: 44718-46125 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 44718-46125 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 97037-97197 bp Num of repeats: 3 Spacers: s22-s23 CRISPR array Location: 97037-97197 bp Num of repeats: 3 Spacers: s22-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44718-46125 bp]: array | spacers
           [Locus range 97037-97197 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VBZU01000008.1 Clostridioides difficile strain GV642 1011_S14_L001_R1_001__paired__contig_8, whole genome shotgun sequence

⇒Summary: seq-len = 198062 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7369-7727 bp Zoom in on locus 1 x6 CRISPR array Location: 7369-7727 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 7369-7727 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7369-7727 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VBZU01000006.1 Clostridioides difficile strain GV642 1011_S14_L001_R1_001__paired__contig_6, whole genome shotgun sequence

⇒Summary: seq-len = 474054 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 209290-220301 bp Zoom in on locus 1 x23 Gene: pfam13280:WYL Type: other Location: 209290-210177 bp Gene: pfam01881:cas6 Type: other Location: 210255-210992 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 210998-212875 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 212877-213791 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 213793-214494 bp Gene: COG1203:cas3 Type: Type-I Location: 214505-216826 bp Gene: pfam01930:cas4 Type: Type-I Location: 216841-217392 bp Gene: cd09722:cas1 Type: universal Location: 217395-218375 bp Gene: cd09725:cas2 Type: universal Location: 218378-218644 bp CRISPR array Location: 218828-220301 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 218828-220301 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 218828-220301 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VBZU01000004.1 Clostridioides difficile strain GV642 1011_S14_L001_R1_001__paired__contig_4, whole genome shotgun sequence

⇒Summary: seq-len = 292718 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 200729-201024 bp Zoom in on locus 1 x5 CRISPR array Location: 200729-201024 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 200729-201024 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 200729-201024 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VBZU01000032.1 Clostridioides difficile strain GV642 1011_S14_L001_R1_001__paired__contig_33, whole genome shotgun sequence

⇒Summary: seq-len = 57427 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38277-39493 bp Zoom in on locus 1 x19 CRISPR array Location: 38277-39493 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 38277-39493 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38277-39493 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: VBZU01000014.1 Clostridioides difficile strain GV642 1011_S14_L001_R1_001__paired__contig_14, whole genome shotgun sequence

⇒Summary: seq-len = 378354 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244919-245477 bp 2 Locus 2: 318744-326609 bp Zoom in on locus 1 x9 Zoom in on locus 2 CRISPR array Location: 244919-245477 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 244919-245477 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318744-319853 bp Gene: pfam01881:cas6 Type: other Location: 320111-320848 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320853-322328 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322348-323361 bp Gene: cd09693:cas5 Type: Type-I Location: 323377-324174 bp Gene: cd09641:cas3HD Type: Type-I Location: 324201-326609 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244919-245477 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: VBZU01000024.1 Clostridioides difficile strain GV642 1011_S14_L001_R1_001__paired__contig_25, whole genome shotgun sequence

⇒Summary: seq-len = 116067 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4850-5864 bp Zoom in on locus 1 x16 CRISPR array Location: 4850-5864 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 4850-5864 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4850-5864 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: VBZU01000001.1 Clostridioides difficile strain GV642 1011_S14_L001_R1_001__paired__contig_1, whole genome shotgun sequence

⇒Summary: seq-len = 120601 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6621-7711 bp Zoom in on locus 1 x17 CRISPR array Location: 6621-7711 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 6621-7711 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6621-7711 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)