CRISPRone

CRISPRone report for GCA_016093955.1_ASM1609395v1

♦ Seq 1: VBZY01000019.1 Clostridioides difficile strain GV599 789_S10_L001_R1_001__paired__contig_19, whole genome shotgun sequence

⇒Summary: seq-len = 38696 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63-420 bp Zoom in on locus 1 x6 CRISPR array Location: 63-420 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 63-420 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63-420 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VBZY01000009.1 Clostridioides difficile strain GV599 789_S10_L001_R1_001__paired__contig_9, whole genome shotgun sequence

⇒Summary: seq-len = 494075 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4850-5864 bp 2 Locus 2: 167815-175680 bp 3 Locus 3: 248948-249505 bp Zoom in on locus 1 x16 Zoom in on locus 2 Zoom in on locus 3 x9 CRISPR array Location: 4850-5864 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 4850-5864 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09641:cas3HD Type: Type-I Location: 167815-170223 bp Gene: cd09693:cas5 Type: Type-I Location: 170250-171047 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 171063-172076 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 172096-173571 bp Gene: pfam01881:cas6 Type: other Location: 173576-174313 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 174571-175680 bp CRISPR array Location: 248948-249505 bp Num of repeats: 9 Spacers: s16-s23 CRISPR array Location: 248948-249505 bp Num of repeats: 9 Spacers: s16-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 4850-5864 bp]: array | spacers
           [Locus range 248948-249505 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VBZY01000014.1 Clostridioides difficile strain GV599 789_S10_L001_R1_001__paired__contig_14, whole genome shotgun sequence

⇒Summary: seq-len = 599193 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 253853-264625 bp Zoom in on locus 1 x19 CRISPR array Location: 253853-255060 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 253853-255060 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09725:cas2 Type: universal Location: 255244-255510 bp Gene: cd09722:cas1 Type: universal Location: 255513-256493 bp Gene: pfam01930:cas4 Type: Type-I Location: 256496-257014 bp Gene: COG1203:cas3 Type: Type-I Location: 257062-259383 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 259394-260095 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 260097-261011 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 261013-262890 bp Gene: pfam01881:cas6 Type: other Location: 262896-263690 bp Gene: pfam13280:WYL Type: other Location: 263711-264625 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 253853-255060 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VBZY01000006.1 Clostridioides difficile strain GV599 789_S10_L001_R1_001__paired__contig_6, whole genome shotgun sequence

⇒Summary: seq-len = 572393 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 175703-175862 bp 2 Locus 2: 226775-228181 bp Zoom in on locus 1 x3 Zoom in on locus 2 x22 CRISPR array Location: 175703-175862 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 175703-175862 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 226775-228181 bp Num of repeats: 22 Spacers: s3-s23 CRISPR array Location: 226775-228181 bp Num of repeats: 22 Spacers: s3-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 175703-175862 bp]: array | spacers
           [Locus range 226775-228181 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VBZY01000015.1 Clostridioides difficile strain GV599 789_S10_L001_R1_001__paired__contig_15, whole genome shotgun sequence

⇒Summary: seq-len = 458773 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 158029-158388 bp 2 Locus 2: 366491-366734 bp Zoom in on locus 1 x6 Zoom in on locus 2 x4 CRISPR array Location: 158029-158388 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 158029-158388 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 366491-366734 bp Num of repeats: 4 Spacers: s6-s8 CRISPR array Location: 366491-366734 bp Num of repeats: 4 Spacers: s6-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 158029-158388 bp]: array | spacers
           [Locus range 366491-366734 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: VBZY01000074.1 Clostridioides difficile strain GV599 789_S10_L001_R1_001__paired__contig_81, whole genome shotgun sequence

⇒Summary: seq-len = 503 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80-503 bp Zoom in on locus 1 x7 CRISPR array Location: 80-503 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 80-503 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 80-503 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: VBZY01000008.1 Clostridioides difficile strain GV599 789_S10_L001_R1_001__paired__contig_8, whole genome shotgun sequence

⇒Summary: seq-len = 131470 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17729-18819 bp Zoom in on locus 1 x17 CRISPR array Location: 17729-18819 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 17729-18819 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17729-18819 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: VBZY01000048.1 Clostridioides difficile strain GV599 789_S10_L001_R1_001__paired__contig_50, whole genome shotgun sequence

⇒Summary: seq-len = 356 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-360 bp Zoom in on locus 1 x6 CRISPR array Location: 1-360 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1-360 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-360 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)