CRISPRone

CRISPRone report for GCA_016093995.1_ASM1609399v1

♦ Seq 1: VBZZ01000014.1 Clostridioides difficile strain GV576 604_S9_L001_R1_001__paired__contig_14, whole genome shotgun sequence

⇒Summary: seq-len = 203663 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 106468-106627 bp 2 Locus 2: 157540-158946 bp Zoom in on locus 1 x3 Zoom in on locus 2 x22 CRISPR array Location: 106468-106627 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 106468-106627 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 157540-158946 bp Num of repeats: 22 Spacers: s3-s23 CRISPR array Location: 157540-158946 bp Num of repeats: 22 Spacers: s3-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 106468-106627 bp]: array | spacers
           [Locus range 157540-158946 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VBZZ01000006.1 Clostridioides difficile strain GV576 604_S9_L001_R1_001__paired__contig_6, whole genome shotgun sequence

⇒Summary: seq-len = 502624 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190178-190537 bp 2 Locus 2: 398641-398936 bp Zoom in on locus 1 x6 Zoom in on locus 2 x5 CRISPR array Location: 190178-190537 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 190178-190537 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 398641-398936 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 398641-398936 bp Num of repeats: 5 Spacers: s6-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190178-190537 bp]: array | spacers
           [Locus range 398641-398936 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VBZZ01000021.1 Clostridioides difficile strain GV576 604_S9_L001_R1_001__paired__contig_21, whole genome shotgun sequence

⇒Summary: seq-len = 67569 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28078-29293 bp Zoom in on locus 1 x19 CRISPR array Location: 28078-29293 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 28078-29293 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28078-29293 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VBZZ01000002.1 Clostridioides difficile strain GV576 604_S9_L001_R1_001__paired__contig_2, whole genome shotgun sequence

⇒Summary: seq-len = 120362 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112653-113742 bp Zoom in on locus 1 x17 CRISPR array Location: 112653-113742 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 112653-113742 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112653-113742 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VBZZ01000010.1 Clostridioides difficile strain GV576 604_S9_L001_R1_001__paired__contig_10, whole genome shotgun sequence

⇒Summary: seq-len = 793451 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 304128-305142 bp 2 Locus 2: 467093-474958 bp 3 Locus 3: 548226-548783 bp Zoom in on locus 1 x16 Zoom in on locus 2 Zoom in on locus 3 x9 CRISPR array Location: 304128-305142 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 304128-305142 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09641:cas3HD Type: Type-I Location: 467093-469501 bp Gene: cd09693:cas5 Type: Type-I Location: 469528-470325 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 470341-471354 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 471374-472849 bp Gene: pfam01881:cas6 Type: other Location: 472854-473591 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 473849-474958 bp CRISPR array Location: 548226-548783 bp Num of repeats: 9 Spacers: s16-s23 CRISPR array Location: 548226-548783 bp Num of repeats: 9 Spacers: s16-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 304128-305142 bp]: array | spacers
           [Locus range 548226-548783 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: VBZZ01000011.1 Clostridioides difficile strain GV576 604_S9_L001_R1_001__paired__contig_11, whole genome shotgun sequence

⇒Summary: seq-len = 473924 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 209290-220301 bp Zoom in on locus 1 x23 Gene: pfam13280:WYL Type: other Location: 209290-210177 bp Gene: pfam01881:cas6 Type: other Location: 210255-210992 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 210998-212875 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 212877-213791 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 213793-214494 bp Gene: COG1203:cas3 Type: Type-I Location: 214505-216826 bp Gene: pfam01930:cas4 Type: Type-I Location: 216841-217392 bp Gene: cd09722:cas1 Type: universal Location: 217395-218375 bp Gene: cd09725:cas2 Type: universal Location: 218378-218644 bp CRISPR array Location: 218828-220301 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 218828-220301 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 218828-220301 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)